DRSC/TRiP Functional Genomics Resources

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Protein Alignment Phax and phax

DIOPT Version :9

Sequence 1:NP_610456.4 Gene:Phax / 35926 FlyBaseID:FBgn0033380 Length:453 Species:Drosophila melanogaster
Sequence 2:XP_002931759.1 Gene:phax / 100492360 XenbaseID:XB-GENE-493560 Length:395 Species:Xenopus tropicalis


Alignment Length:387 Identity:116/387 - (29%)
Similarity:171/387 - (44%) Gaps:80/387 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MMELHANDVDLEDGELSESDDDGVYTPLQRPDGAEKVASPLTTCHQIQTALEDESQSNSDSST-- 63
            |||    |..|||||||.||.|      .|..|........|..  |.|:|...|.|...::.  
 Frog     9 MME----DEGLEDGELSGSDTD------MRTSGVGNKGQQKTDL--ITTSLSYRSNSTLSNNVPY 61

  Fly    64 -----AESSEDGCIKKLRTESTGPDGHKKRKKRIRRT-----VMRRVPPTDAEMQP-NRARFKKY 117
                 .:||||..     ::|...||...::||.:.|     :.|.:|....:.:| .....|:.
 Frog    62 RTTKGLDSSEDSA-----SDSDDEDGSSWKRKRQKCTHPAPKMARPLPVLQGQQRPIGTGGTKRN 121

  Fly   118 NVWASALQE---DALSENMRGCDVT-RSGRDRNVENYDFSLRYRL------NGENTLKRRLSNSS 172
            |||.:.|||   :|::..:...|:. :....|..|.|::.|..:|      ..|..|.:.|....
 Frog   122 NVWGAVLQEQTQEAVATELGIMDMEGQLDMSRQSETYNYILARKLMEKTEKEEELKLDKELDEYM 186

  Fly   173 EDGGECSHPAHKRGR-PSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSDFCEPRHILDLN--- 233
            ::..| |.|..:.|. ...|||         |.|.|.|                    |:::   
 Frog   187 QEDKE-SAPKEENGHLKRKRPI---------KERLGER--------------------LEMDYKG 221

  Fly   234 --EVGERDPSD-VATEMASKLYEEKDELLVRVVEVLGIDVCLELYKETQRIEADGGMMIKNGIRR 295
              |:.|.|..| |:.|:|.:|.|.|.:|:.|||:.||....:||..||..:|.:||:.|.||.||
 Frog   222 RYEITEADSEDKVSDEIAHRLREPKKDLIERVVKTLGTKKAIELLMETAEVEHNGGLFILNGSRR 286

  Fly   296 RTPGGVFLFLIKHHDNITQEQQKRIFSEDRQSLSKSRKQIETLMR---DRKVEELKKCLSKQ 354
            ||||||:|.|:|:..:||.:|.|.||..:.|...:|:|..:...|   .:|::|..|.|:.|
 Frog   287 RTPGGVYLNLLKNTPSITSDQVKEIFCLENQKEQESKKAAKKRRRHLLGKKMKEAIKGLNFQ 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PhaxNP_610456.4 RNA_GG_bind 243..326 CDD:287260 39/82 (48%)
phaxXP_002931759.1 RNA_GG_bind 234..317 CDD:370928 39/82 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 76 1.000 Domainoid score I8860
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 106 1.000 Inparanoid score I4804
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1223195at2759
OrthoFinder 1 1.000 - - FOG0006484
OrthoInspector 1 1.000 - - oto104994
Panther 1 1.100 - - LDO PTHR13135
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4292
SonicParanoid 1 1.000 - - X5458
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.100

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