DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tsu and RBP45B

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_172630.1 Gene:RBP45B / 837708 AraportID:AT1G11650 Length:405 Species:Arabidopsis thaliana


Alignment Length:365 Identity:76/365 - (20%)
Similarity:126/365 - (34%) Gaps:115/365 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   811 YILFPSLR-DDV------------------CYVENTIESILRIMRDPNLTARIKTS------WSL 850
            |.:||:.| :||                  .:.:|.||...:|  .|.|...|:.|      :|.
plant     9 YDVFPNFRGEDVRHSLVSHLRKELDRKFINTFNDNRIERSRKI--TPELLLAIENSRISLVVFSK 71

  Fly   851 GNATDALILNQQHHLQHESTALEDSSIMI-----SDDMMRRTLEVAL---ESAK---DNDKVRSN 904
            ..|:....|::...:|.....|:...|.|     ...:.::|.|..:   |:.|   :|:|  ..
plant    72 NYASSTWCLDELVKIQECYEKLDQMVIPIFYKVDPSHVRKQTGEFGMVFGETCKGRTENEK--RK 134

  Fly   905 AVRTIGNVLHLLRPAQLEQPAWTSLYQEAIERLIQNVTVSSTVNVKVKWNACYALGNMMKNETFF 969
            .:|.:..|.||   |..:...|.| ..|.:|.:.::|:           |..:...|   |.:.|
plant   135 WMRALAEVAHL---AGEDLRNWRS-EAEMLENIAKDVS-----------NKLFPPSN---NFSDF 181

  Fly   970 LPGAGGGSWERRVFPALCETVVSSPNF---KVRINAAQALSVIGR----RAHYGA----FFHQTW 1023
            :.           ..|..|.::|...|   |.|:......|..|:    ||.|..    |.|:.:
plant   182 VG-----------IEAHIEALISMLRFDSKKARMIGICGPSETGKTTIGRALYSRLKSDFHHRAF 235

  Fly  1024 AALLQALEQSDNLVDYNE--YKRRDSLQEQLCLS-------------LAHLLRLATREDVVSMAT 1073
            .|..:.:..     ||::  |.....|.|.||..             |.|...|...:||..: .
plant   236 VAYKRKIRS-----DYDQKLYWEEQFLSEILCQKDIKIEECGAVEQRLKHTKVLIVLDDVDDI-E 294

  Fly  1074 VLLPLYDAVRGNWVRVISRILPEKSAVLLESYRVLTELRK 1113
            :|..|...:|  |....|:|:            |:|:.|:
plant   295 LLKTLVGRIR--WFGSESKIV------------VITQKRE 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520
RRM_RBM8 67..154 CDD:409762
RBP45BNP_172630.1 RRM1_SECp43_like 63..142 CDD:409780 14/80 (18%)
RRM2_SECp43_like 154..233 CDD:409781 20/104 (19%)
RRM_SF 260..331 CDD:473069 16/76 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.