DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsu and AT5G55670

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_200378.1 Gene:AT5G55670 / 835661 AraportID:AT5G55670 Length:710 Species:Arabidopsis thaliana


Alignment Length:93 Identity:29/93 - (31%)
Similarity:48/93 - (51%) Gaps:0/93 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 136
            |..|||..:|....:.|::.:.|.||.:|.:....::.:|.||||..||:.....|.|.|:||||
plant   233 GAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNG 297

  Fly   137 AEIMGQTIQVDWCFVKGPKRVKKSEKRR 164
            ....|:...|::......||:.:::..|
plant   298 YPFNGRPCVVEYASPYSVKRMGEAQVNR 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 4/7 (57%)
RRM_RBM8 67..154 CDD:409762 26/81 (32%)
AT5G55670NP_200378.1 RRM_CFIm68_CFIm59 236..309 CDD:409807 25/72 (35%)
SF-CC1 562..>674 CDD:273721
Blue background indicates that the domain is not in the aligned region.

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