DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tsu and AT5G03580

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_195978.1 Gene:AT5G03580 / 831785 AraportID:AT5G03580 Length:101 Species:Arabidopsis thaliana


Alignment Length:100 Identity:26/100 - (26%)
Similarity:50/100 - (50%) Gaps:8/100 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 NEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVE 120
            |:|:......|::...   |::.::..:..|:.:...|.|:|::....|..|.| |.|:|:|.:|
plant     3 NDDNHGSSSCPRKFTS---LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFR-GESRGFAFIE 63

  Fly   121 YETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155
            :|:...|..|...::| .::||.|   .|..:.||
plant    64 FESADSAGRAMLHMDG-RLIGQKI---LCVQRTPK 94

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 4/23 (17%)
RRM_RBM8 67..154 CDD:409762 21/86 (24%)
AT5G03580NP_195978.1 RRM_SF 19..90 CDD:409669 21/75 (28%)

Return to query results.
Submit another query.