DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsu and U1-70K

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_190636.1 Gene:U1-70K / 824230 AraportID:AT3G50670 Length:427 Species:Arabidopsis thaliana


Alignment Length:114 Identity:37/114 - (32%)
Similarity:57/114 - (50%) Gaps:8/114 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 SNTREAIHSYERVRN-----EDDDELEPGPQRSVEG---WILFVTSIHEEAQEDEIQEKFCDYGE 98
            |..||.||.....:.     ||..:.:|....:..|   ..|||:.::.|:.|.:|:.:|..||.
plant    99 SQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGP 163

  Fly    99 IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147
            ||.:||..|:.|...||||.:||...:...||.:..:|.:|.|:.:.||
plant   164 IKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVD 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 12/45 (27%)
RRM_RBM8 67..154 CDD:409762 29/84 (35%)
U1-70KNP_190636.1 U1snRNP70_N 40..129 CDD:432406 8/29 (28%)
RRM_snRNP70 137..227 CDD:409682 28/76 (37%)
PRK12678 245..>395 CDD:237171
Blue background indicates that the domain is not in the aligned region.

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