DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsu and Myef2

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_001013223.2 Gene:Myef2 / 679712 RGDID:1306547 Length:591 Species:Rattus norvegicus


Alignment Length:161 Identity:39/161 - (24%)
Similarity:69/161 - (42%) Gaps:30/161 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NAEEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGW 73
            |..:.|.||.       :||:....|.:..|:....|  .|.|.:.:|....| :.||.|:    
  Rat    41 NGVKMENDES-------VKEEKSDLKEKSTGNKKANR--FHPYSKDKNSGTGE-KKGPNRN---- 91

  Fly    74 ILFVTSI----HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134
            .:|:::|    ..:|.:|.::||   .||:..:.|..|.. |.|:|..:||::..:....|.|.:
  Rat    92 RVFISNIPYDMKWQAIKDLMREK---VGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALETM 152

  Fly   135 NGAEIMGQTIQVDWCFVKGPKRVKKSEKRRR 165
            |..::.|:.:.:        |.....|..||
  Rat   153 NKYDLSGRPLNI--------KEDPDGENARR 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 16/69 (23%)
RRM_RBM8 67..154 CDD:409762 20/90 (22%)
Myef2NP_001013223.2 RRM1_MYEF2 92..167 CDD:410059 20/86 (23%)
PABP-1234 115..>587 CDD:130689 17/70 (24%)
RRM2_MYEF2 224..299 CDD:410061
RRM3_MYEF2 515..591 CDD:410063
Blue background indicates that the domain is not in the aligned region.

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