DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsu and hnrnpm

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_001243560.1 Gene:hnrnpm / 555643 ZFINID:ZDB-GENE-030131-6898 Length:686 Species:Danio rerio


Alignment Length:164 Identity:30/164 - (18%)
Similarity:61/164 - (37%) Gaps:28/164 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NAEEFEVDEDGDQGIVRLKEKAKHR------------------------KGRGFGSDSNTREAIH 49
            |....:|.||.| |::..:|..:..                        .|.|.|....:...::
Zfish   115 NGRPLKVKEDPD-GVISQREANRGHGGGGGGGGPPGMGGGMGGGMGGGMGGMGMGPGPGSSSMVN 178

  Fly    50 SYERVRNEDD--DELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGF 112
            ....:.|..:  :|:..|.|....|..:||.::..:....:::|.|...|.:....: |:.:.|.
Zfish   179 IPPSLMNNPNIPNEVIHGLQAGKIGSTIFVANLDYKVGWKKLKEVFGMAGMVVRADI-LEDKDGK 242

  Fly   113 SKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146
            |:|...|.::...:|:.|....||..:..:.:.|
Zfish   243 SRGMGTVTFDMPIEAVQAVSMFNGQLLFNRVMHV 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 16/95 (17%)
RRM_RBM8 67..154 CDD:409762 17/80 (21%)
hnrnpmNP_001243560.1 RRM1_hnRNPM 49..124 CDD:410058 2/8 (25%)
RRM2_hnRNPM 204..279 CDD:410060 15/74 (20%)
RRM3_hnRNPM 610..686 CDD:410062
Blue background indicates that the domain is not in the aligned region.

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