DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsu and hnrnpdl

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_001011015.1 Gene:hnrnpdl / 496424 XenbaseID:XB-GENE-495016 Length:297 Species:Xenopus tropicalis


Alignment Length:146 Identity:37/146 - (25%)
Similarity:70/146 - (47%) Gaps:25/146 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 KGRGFG----SDSNTREAIHSYERVRNEDDDEL-EPGPQRSVEG----WILFVTSIHEEAQEDEI 89
            :.||||    .|:.:.:.:  .|...::.|.:| :|...::::|    ..:||..:..|..|::|
 Frog    65 RSRGFGFVLFKDAVSVDKV--LETKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQI 127

  Fly    90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEY---ETHKQALAAKEALNGAEIMGQTIQVDWCFV 151
            ::.|..:|||:||.|.:|.:|...:|:..|.|   |..|:.|         |.....|....|.:
 Frog   128 KQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLL---------ESRFHQIGTGKCEI 183

  Fly   152 K--GPKRVKKSEKRRR 165
            |  .||.|.:.:::::
 Frog   184 KVAQPKEVYRQQQQKQ 199

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 12/54 (22%)
RRM_RBM8 67..154 CDD:409762 25/95 (26%)
hnrnpdlNP_001011015.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
RRM1_hnRPDL 27..102 CDD:410152 9/38 (24%)
RRM2_hnRPDL 112..186 CDD:409998 24/82 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 192..224 0/8 (0%)
Trnau1ap 223..>272 CDD:465438
Blue background indicates that the domain is not in the aligned region.

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