DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsu and tia1

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:XP_012814227.2 Gene:tia1 / 394890 XenbaseID:XB-GENE-1002876 Length:389 Species:Xenopus tropicalis


Alignment Length:85 Identity:26/85 - (30%)
Similarity:44/85 - (51%) Gaps:4/85 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 139
            |:|.::..:..|..|.:.|...|..|:..:.:|  |..:..|..||:..|:.|.|:..|:||.:|
 Frog     9 LYVGNLSRDVTEPLILQVFSQLGPCKSCKMIMD--TAGNDPYCFVEFFEHRHAAASLAAMNGRKI 71

  Fly   140 MGQTIQVDWCFVKGPKRVKK 159
            ||:.::|:|...  |...||
 Frog    72 MGKEVKVNWATT--PSSQKK 89

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 2/4 (50%)
RRM_RBM8 67..154 CDD:409762 23/78 (29%)
tia1XP_012814227.2 RRM1_TIA1 8..81 CDD:410027 22/73 (30%)
RRM2_TIA1 104..181 CDD:410030
RRM3_TIAR 214..286 CDD:241064
Blue background indicates that the domain is not in the aligned region.

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