DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsu and cstf2

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:XP_009289373.1 Gene:cstf2 / 386806 ZFINID:ZDB-GENE-031118-2 Length:508 Species:Danio rerio


Alignment Length:85 Identity:31/85 - (36%)
Similarity:49/85 - (57%) Gaps:2/85 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQA 127
            :|...||:..  :||.:|..||.|:::::.|.:.|.:.:..|..||.||..|||...||:..:.|
Zfish    16 DPAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETA 78

  Fly   128 LAAKEALNGAEIMGQTIQVD 147
            |:|...|||.|..|:.::||
Zfish    79 LSAMRNLNGREFSGRALRVD 98

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 5/16 (31%)
RRM_RBM8 67..154 CDD:409762 30/81 (37%)
cstf2XP_009289373.1 RRM_CSTF2_CSTF2T 19..102 CDD:410072 30/82 (37%)
PABP-1234 <26..372 CDD:130689 28/73 (38%)
CSTF2_hinge 120..199 CDD:433869
CSTF_C 464..503 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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