DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsu and Snrnp35

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_001014149.1 Gene:Snrnp35 / 360803 RGDID:1310724 Length:244 Species:Rattus norvegicus


Alignment Length:86 Identity:31/86 - (36%)
Similarity:48/86 - (55%) Gaps:3/86 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 PQRSVEG---WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQA 127
            |.:.|.|   ..|||..::.:.:|::::|.|..||:|:.:.|..|..||||||||.:||:..:..
  Rat    41 PNKGVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAL 105

  Fly   128 LAAKEALNGAEIMGQTIQVDW 148
            |.|....:|..|....|.||:
  Rat   106 LKAYRDADGLVIDQHEIFVDY 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 6/16 (38%)
RRM_RBM8 67..154 CDD:409762 30/85 (35%)
Snrnp35NP_001014149.1 RRM_snRNP35 47..137 CDD:409683 29/80 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 146..244
Blue background indicates that the domain is not in the aligned region.

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