DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsu and rna15

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_593884.1 Gene:rna15 / 2543462 PomBaseID:SPAC644.16 Length:422 Species:Schizosaccharomyces pombe


Alignment Length:86 Identity:23/86 - (26%)
Similarity:43/86 - (50%) Gaps:0/86 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAE 138
            :::|.:|..|..|:::.:.|...|.:|:..|.:|..:|..|||...||.....|.:|...||..:
pombe     6 VVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYD 70

  Fly   139 IMGQTIQVDWCFVKGPKRVKK 159
            ...:.::||:......:|:.|
pombe    71 AGTRRLRVDFPTADQIRRLDK 91

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 1/5 (20%)
RRM_RBM8 67..154 CDD:409762 21/79 (27%)
rna15NP_593884.1 RRM_CSTF2_RNA15_like 5..80 CDD:409832 20/73 (27%)
CSTF2_hinge 150..222 CDD:433869
Blue background indicates that the domain is not in the aligned region.

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