DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsu and Ncl

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_035010.3 Gene:Ncl / 17975 MGIID:97286 Length:707 Species:Mus musculus


Alignment Length:130 Identity:42/130 - (32%)
Similarity:66/130 - (50%) Gaps:11/130 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 HRKGRG-----FGSDSNTREAIHSYERVRNEDDD---ELEPGPQRSVEGWILFVTSIHEEAQEDE 88
            |.|.:|     |.|..:.:||::|..::..|...   ||:....||.....|||..:.|:..|:.
Mouse   520 HGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRSQPSKTLFVKGLSEDTTEET 584

  Fly    89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153
            ::|.|  .|.:: ..:..||.||.|||:..|::.:.:.|.|||||:...||.|..:.:||...||
Mouse   585 LKESF--EGSVR-ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 646

  Fly   154  153
            Mouse   647  646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 16/55 (29%)
RRM_RBM8 67..154 CDD:409762 31/87 (36%)
NclNP_035010.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..308
PRK13808 <12..142 CDD:172341
8 X 8 AA tandem repeats of X-T-P-X-K-K-X-X 58..135
RRM1_NCL 309..383 CDD:409837
RRM2_NCL 392..467 CDD:409838
RRM3_NCL 486..558 CDD:409839 9/37 (24%)
RRM4_NCL 569..646 CDD:409840 27/79 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 639..707 4/8 (50%)
Blue background indicates that the domain is not in the aligned region.

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