DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsu and cpf-2

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_499734.1 Gene:cpf-2 / 176742 WormBaseID:WBGene00000774 Length:336 Species:Caenorhabditis elegans


Alignment Length:114 Identity:34/114 - (29%)
Similarity:49/114 - (42%) Gaps:28/114 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 KGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGE 98
            |..|.|:|.:                       ||||     ||.:|..:..||.|:..|...|.
 Worm     7 KSSGVGNDRS-----------------------QRSV-----FVGNISYDVSEDTIRSIFSKAGN 43

  Fly    99 IKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147
            :.:|.:..||.||..|||..:|:...:.|..|...|||.|:.|:.::||
 Worm    44 VLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 10/45 (22%)
RRM_RBM8 67..154 CDD:409762 30/81 (37%)
cpf-2NP_499734.1 RRM_CSTF2_RNA15_like 18..94 CDD:409832 29/80 (36%)
CSTF2_hinge 115..194 CDD:433869
CSTF_C 299..334 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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