DRSC/TRiP Functional Genomics Resources

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Protein Alignment tsu and CSTF2

DIOPT Version :10

Sequence 1:NP_610454.2 Gene:tsu / 35924 FlyBaseID:FBgn0033378 Length:165 Species:Drosophila melanogaster
Sequence 2:NP_001293135.1 Gene:CSTF2 / 1478 HGNCID:2484 Length:597 Species:Homo sapiens


Alignment Length:85 Identity:31/85 - (36%)
Similarity:49/85 - (57%) Gaps:2/85 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQA 127
            :|...||:..  :||.:|..||.|:::::.|.:.|.:.:..|..||.||..|||...||:..:.|
Human     8 DPAVDRSLRS--VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 70

  Fly   128 LAAKEALNGAEIMGQTIQVD 147
            |:|...|||.|..|:.::||
Human    71 LSAMRNLNGREFSGRALRVD 90

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tsuNP_610454.2 PBP2_NikA_DppA_OppA_like 10..>80 CDD:445520 5/16 (31%)
RRM_RBM8 67..154 CDD:409762 30/81 (37%)
CSTF2NP_001293135.1 PABP-1234 4..352 CDD:130689 31/85 (36%)
RRM_CSTF2_CSTF2T 10..94 CDD:410072 30/83 (36%)
CSTF2_hinge 112..191 CDD:433869
PHA03378 <253..455 CDD:223065
CSTF_C 553..593 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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