DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgm2a and PCM1

DIOPT Version :9

Sequence 1:NP_610453.1 Gene:Pgm2a / 35923 FlyBaseID:FBgn0033377 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_010856.1 Gene:PCM1 / 856652 SGDID:S000000784 Length:557 Species:Saccharomyces cerevisiae


Alignment Length:670 Identity:120/670 - (17%)
Similarity:216/670 - (32%) Gaps:229/670 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 CQIMDAVRAKDWDTLRKRLCTRISFGTAGLRACMRAGFDSMNELVVIQTAQGLCEYIKEQYPDPA 105
            |::.|       ||.|.: ..:.|:||||.|...:       .|..:..:.|:...::.      
Yeast     9 CKLYD-------DTCRTK-NVQFSYGTAGFRTLAK-------NLDTVMFSTGILAVLRS------ 52

  Fly   106 DWSGRGIVFGYDGRYNSHRFAELSAIVFLNNDFKVWLFKRYVATPMVPFAILRLQCLAGVMVTAS 170
                    ....|:|                                          .|||:|||
Yeast    53 --------LKLQGQY------------------------------------------VGVMITAS 67

  Fly   171 HNPKEDNGYKVYWTNGAQIIPPHDEGIQESILNNLEPKGSSWDDSAMCSNTMLE----DPYDIVV 231
            |||.:|||.|:...:|:.::...:....:  |.|.....:::::..:....::|    |....||
Yeast    68 HNPYQDNGVKIVEPDGSMLLATWEPYAMQ--LANAASFATNFEEFRVELAKLIEHEKIDLNTTVV 130

  Fly   232 P------------PY------------FDILKKQLPC---------TSLEANGRCSLSFTYTAMH 263
            |            ||            |......|.|         |.|....:........|..
Yeast   131 PHIVVGRDSRESSPYLLRCLTSSMASVFHAQVLDLGCVTTPQLHYITDLSNRRKLEGDTAPVATE 195

  Fly   264 GVGYAF----VKQAFARINLKPFISV----------------------------CEQQEPDPEFP 296
            ...|:|    ..:.||...|:..:||                            .||.|...:..
Yeast   196 QDYYSFFIGAFNELFATYQLEKRLSVPKLFIDTANGIGGPQLKKLLASEDWDVPAEQVEVINDRS 260

  Fly   297 TTP-MPNPEEG----KTSLDLSIKTAKANSSQIILANDPDADRLAVAEVREDGSYKLFSGNEVGA 356
            ..| :.|.|.|    ||:..|....:.::...:..:.|.||||:....|.....:.|..|:::..
Yeast   261 DVPELLNFECGADYVKTNQRLPKGLSPSSFDSLYCSFDGDADRVVFYYVDSGSKFHLLDGDKIST 325

  Fly   357 LLGWW------------SLELHKMREPDCDVSNCVMIASTVSSKILRAMAEREGFQFFETLTGFK 409
            |...:            ||::..::....:.|:...|.:|:...:..            |.||.|
Yeast   326 LFAKFLSKQLELAHLEHSLKIGVVQTAYANGSSTAYIKNTLHCPVSC------------TKTGVK 378

  Fly   410 WMGNKAIELQQAG--------KTVLFA--FEEAIGFMVGTTVLDKDGVSAAGHLATMACYLRCKL 464
            .:.::|......|        .|::|:  |...|...:..:.|:.|.::    |.|:.|:... :
Yeast   379 HLHHEAATQYDIGIYFEANGHGTIIFSEKFHRTIKSELSKSKLNGDTLA----LRTLKCFSEL-I 438

  Fly   465 CMTLQEKLRDIYETYGFHTTVSSYVICRCPPVIEQIFERLRTWDEGKADTYPTSILNGEYEIENV 529
            ..|:.:.:.|:.      ..:::..|.:..|:         .|||...| .|..::.......::
Yeast   439 NQTVGDAISDML------AVLATLAILKMSPM---------DWDEEYTD-LPNKLVKCIVPDRSI 487

  Fly   530 RDLTTGFDSSTGDKKATLPTSSSSQMITFTFKNGLVVT--------LRTSGTEPKMKYYAEMCGK 586
                  |.::..::|...|.....       |..|||.        :|.||||..::.||| |  
Yeast   488 ------FQTTDQERKLLNPVGLQD-------KIDLVVAKYPMGRSFVRASGTEDAVRVYAE-C-- 536

  Fly   587 PDEKNWAKLTNTMNTMVEAI 606
               |:.:||....:.:||.:
Yeast   537 ---KDSSKLGQFCDEVVEHV 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgm2aNP_610453.1 PTZ00150 23..623 CDD:240294 120/670 (18%)
PGM2 62..604 CDD:100092 113/645 (18%)
PCM1NP_010856.1 PGM3 24..553 CDD:100088 115/645 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1109
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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