DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgm2a and Pgm3

DIOPT Version :9

Sequence 1:NP_610453.1 Gene:Pgm2a / 35923 FlyBaseID:FBgn0033377 Length:623 Species:Drosophila melanogaster
Sequence 2:NP_001102242.1 Gene:Pgm3 / 363109 RGDID:1305221 Length:552 Species:Rattus norvegicus


Alignment Length:548 Identity:114/548 - (20%)
Similarity:186/548 - (33%) Gaps:177/548 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 AILR---LQCLAGVMVTASHNPKEDNGYKVYWTNGAQIIP------------------------- 191
            |:||   .:...||||||||||:||||.|:....|..:.|                         
  Rat    46 AVLRSKQTRSTIGVMVTASHNPEEDNGVKLVDPLGEMLAPSWEEHATRLASAEEQDLPKVLAAIV 110

  Fly   192 --------------------PHDEGIQESILNNLEPKGSSWDDSAM-----------CSNTMLED 225
                                |..|.:.:|:::.:...|..:.|..:           |.|:  |.
  Rat   111 EREAVDPQQTAFIVVGRDTRPSSEKLSQSVIDGVTVLGGQFHDYGLLTTPQLHYMVYCRNS--EG 173

  Fly   226 PY-DIVVPPY-------FDILKKQLPCTSLEANGRCSLSFTYTAMHGVGYAFVKQA--FARINLK 280
            .| ...:..|       |..|.||..|     :|..|........:|:|...:|:.  :.|..|.
  Rat   174 RYGQATIEGYCQKLSRAFVELMKQASC-----SGDGSRWVKVDCANGIGALKLKEMEHYFRQGLS 233

  Fly   281 PFI----------SVC------EQQEPDPEFPTTPMPNPEEGKTSLDLSIKTAKANSSQIILAND 329
            ..:          .:|      .||:|    |......|.:...|.                  |
  Rat   234 VLLFNDGTEGRLNHLCGADFVKSQQKP----PQGMAMKPGDRCCSF------------------D 276

  Fly   330 PDADRLAVAEVREDGSYKLFSGNEVGALLGWWSLELHKMREPDCDVSNCVMIASTVSSKILRAMA 394
            .||||:........|.:.|..|:::..|:..:..||  :.|...:::..|:..:..:....|.:.
  Rat   277 GDADRIVYYYCDAAGRFHLIDGDKIATLISSFLKEL--LLEIGENLNIGVVQTAYANGSSTRYLE 339

  Fly   395 EREGFQFFETLTGFKWMGNKAIELQQAGKTVLFAFEEAIGFMVGTTVLDKDGVSAAGH---LATM 456
            |......:.|.||.|.:.:||.|           |:..:.|            .|.||   |.:.
  Rat   340 EVMKVPVYCTKTGVKHLHHKAQE-----------FDIGVYF------------EANGHGTALFSE 381

  Fly   457 ACYLRCK-LCMTLQ-EKLR---------DIY-ETYGFHTTVSSYVICRCPPVIEQIFE----RLR 505
            |...|.| |...|: ||.|         |:: :..|  ..:|..:      |||.|..    .::
  Rat   382 AVEARIKRLAQELEDEKGRAARMLASFIDLFNQAAG--DAISDML------VIEAILALKGLSVQ 438

  Fly   506 TWDEGKADTYPTSILNGEYEIENVRDLTTGFDSSTGDKKATLPTSSSSQMITFTFKNGLV-VTLR 569
            .||...|| .|...|  :.::.:.|.::|    :..:::|..|......:.....|..|. ..:|
  Rat   439 QWDAIYAD-LPNRQL--KVKVADRRVIST----TDAERQAVTPPGLQEAINDLVKKYKLARAFVR 496

  Fly   570 TSGTEPKMKYYAEMCGKPDEKNWAKLTN 597
            .||||..::.|||   ...:.:|.:.|:
  Rat   497 PSGTEDVVRVYAE---ATSQVSWDQSTD 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgm2aNP_610453.1 PTZ00150 23..623 CDD:240294 114/548 (21%)
PGM2 62..604 CDD:100092 114/548 (21%)
Pgm3NP_001102242.1 PLN02895 1..523 CDD:215485 114/548 (21%)
PGM3 22..525 CDD:100088 114/548 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1109
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.