DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vang and Vangl1

DIOPT Version :9

Sequence 1:NP_001260819.1 Gene:Vang / 35922 FlyBaseID:FBgn0015838 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_006233116.1 Gene:Vangl1 / 690366 RGDID:1597324 Length:539 Species:Rattus norvegicus


Alignment Length:602 Identity:259/602 - (43%)
Similarity:361/602 - (59%) Gaps:84/602 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MENESVKSEHSGRSRRSRNHNNNGGGGGGGGGGGGGSVNNGYHRERDRSRHSHRSTHSSKSAKGF 65
            |:.||..|.:|..|..|:..                      ||:.:|:|..|:|.. :|..:|.
  Rat     1 MDTESTYSGYSYYSSHSKKS----------------------HRQGERTRERHKSPR-NKDGRGS 42

  Fly    66 QRG--DMAPYQTSVNMTGDGSHDGQEVIEVQILPQDENWGENTTAVTGNTSEQSISMEDINNMWH 128
            ::.  ..||....: :..|.:|.|.|.:      ||:||||.|||:|| |||.|||.|||..: .
  Rat    43 EKSVTIQAPTGEPL-LANDSAHTGTEEV------QDDNWGETTTAITG-TSEHSISQEDIARI-S 98

  Fly   129 RESDKGFSFACRRYVESSFYFLLGCGAFFSPVAMVVMPYVGFFPSAFDHPEITQTVRTQLLACSE 193
            ::.:......|:||:..:....||...|.:|:|.:::|.:.:              |.:|..|..
  Rat    99 KDMEDSVGLDCKRYLGLTIASFLGLLVFLTPIAFILLPQILW--------------REELKPCGA 149

  Fly   194 QCKGQLVSLAARLLLLAIGLWAVFMRRTSATMPRIFLYRALVLLLVTICTFAYWLFYIVQVTNGA 258
            .|:|.|:|::.:||:|.||.||:|.|:..|.:||:|::|||:|:|:.:...:|||||      |.
  Rat   150 ICEGLLISVSFKLLILLIGTWALFFRKQRADVPRVFVFRALLLVLIFLFVVSYWLFY------GV 208

  Fly   259 KIVVETGGDAVD--YKSLVGYATNFVDTLLFIHYVAVVLLELRHQQPCYYIKIIRSPDGVSRSYM 321
            :|:     |:.|  ||.:|.||.:.||.||||||:|:||||||..||.:.::::||.||.||.|.
  Rat   209 RIL-----DSRDQNYKDIVQYAVSLVDALLFIHYLAIVLLELRQLQPMFTLQVVRSTDGESRFYS 268

  Fly   322 LGQLSIQRAAVWVLQHYYVDFPIFNPYLERIPISVSKSQRNKISNSFKYYEV------------- 373
            ||.|||||||:.||::||.||.|:||.|    ::.||.:..|.....|.|.|             
  Rat   269 LGHLSIQRAALVVLENYYKDFTIYNPNL----LTASKFRAAKHMAGLKVYNVDAALMAKLKLCVA 329

  Fly   374 DGVSNSQQQSQSRAVLAANARRRDSSHNERFYEEHEYERRVKKRRARLITAAEEAFTHIKRIHNE 438
            ||.||: ...||||::||.||||||||||.:|||.|:|||||||||||:.|.||||.||:|:..|
  Rat   330 DGPSNN-ATGQSRAMIAAAARRRDSSHNELYYEEAEHERRVKKRRARLVVAVEEAFIHIQRLQAE 393

  Fly   439 ---PAPALPLDPQEAASAVFPSMARALQKYLRVTRQQPRHTFESILKHLAHCLKHDLSPRAFLEP 500
               .:|...:||:|||.|:|||||||||||||.||||..|:.||||:|||.|:.:.::|:||||.
  Rat   394 EQQKSPGEVMDPREAAQAIFPSMARALQKYLRTTRQQHYHSMESILQHLAFCITNSMTPKAFLER 458

  Fly   501 YLTESPVMQSEKERRWVQS-WSLICDEIVSRPIGNECTFQLIQNDVSLMVTVHKLPHFNLAEEVV 564
            ||:..|.:|.:|: ||:.: |.||.||.|:..:.:...|.|...|.||:|.|.|:|...|:||.:
  Rat   459 YLSAGPTLQYDKD-RWLSTQWRLISDEAVTNGLRDGIVFVLKCLDFSLVVNVKKIPFIVLSEEFI 522

  Fly   565 DPKSNKFVLKLNSETSV 581
            ||||:||||:|.|||||
  Rat   523 DPKSHKFVLRLQSETSV 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
VangNP_001260819.1 Strabismus 44..581 CDD:284135 249/557 (45%)
Vangl1XP_006233116.1 Strabismus 25..539 CDD:399556 248/554 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350680
Domainoid 1 1.000 435 1.000 Domainoid score I552
eggNOG 1 0.900 - - E1_KOG3814
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H44540
Inparanoid 1 1.050 440 1.000 Inparanoid score I1613
OMA 1 1.010 - - QHG47940
OrthoDB 1 1.010 - - D1325060at2759
OrthoFinder 1 1.000 - - FOG0002892
OrthoInspector 1 1.000 - - otm45719
orthoMCL 1 0.900 - - OOG6_105860
Panther 1 1.100 - - O PTHR20886
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2248
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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