Protein Alignment Dbp45A and Gem3

DIOPT Version :9

• Sequence 1: NP_476927.1
• Gene: Dbp45A / 35917
• FlyBaseID: FBgn0010220
• Length: 521
• Species: Drosophila melanogaster
• Sequence 2: NP_001261678.1
• Gene: Gem3 / 39195
• FlyBaseID: FBgn0011802
• Length: 1028
• Species: Drosophila melanogaster
• Alignment Length: 567
• Identity: 129/567 - (22%)
• Similarity: 239/567 - (42%)
• Gaps: 87/567 - (15%)

  Fly     5 EANPFQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERL 69
            :...|:.|.|...|:..|.:......|.||...||..||..|.|..:|:|:|||..:.:.:::..
  Fly    23 QVKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQSF 87

  Fly    70 SEEPVSHFALVLTPTHELAYQISEQFL-VAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMP 133
            :.......|:::.||.|||.|:.:.|. :.......:.....|||| :.:.:|.|....:::..|
  Fly    88 NPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTD-VAKDRKRMNESRVIIGTP 151

  Fly   134 GRLADHLTGCDTFSFDNLKYLVVDEADRML-NGDFDESLSIIERCLPKTRQNLFFSATMKDFIKE 197
            |||. ||.....|....|:.||:||||::. ......::|.:...:||.||.:..|||
  Fly   152 GRLL-HLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIACSAT------- 208

  Fly   198 SSIFPIASDCFEWSQDSDVATVETLDQRYLLCADYDRDMVLIEALRKY----REENENANVM--- 255
                        :.|:.|....:.:| :.:|.::.:|..||: .:|::    .::|.:...|
  Fly   209 ------------YDQNLDERLAKVMD-KPMLISNSERATVLL-GIRQFVYELPQQNNSVEEMRLK 259

  Fly   256 ------IFTNTKKYCQLLSMTLKNMEIDNV----------C--LHGFMRQKERVAALSRFKSNQI 302
                  || |...|.|.:......|..|:.          |  :.|.|.|.||:.....:::..:
  Fly   260 LQILGQIF-NQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTM 323

  Fly   303 RTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMSISIFRFPRDLELLAAI 367
            |.|:|||:.|||:|.|...||:|...|:....|:||:||..|.|.||::|:.....::.:....:
  Fly   324 RILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFREM 388

  Fly   368 EEEINT-----KLTEHPI-------------------DQRMVERIFMQVNVTRRESEMQLDNNDF 408
            .::|.|     :..:.|:                   ::..::.:.|.:...|.:..:...:.|.
  Fly   389 SKKIATAWSVLEFPKEPMPNEFNFWDFEKYNFDYYIKEENPLQEMPMPIKENRSKENVDASSVDL 453

  Fly   409 D--ERAQNYRRKTWIMEGKDPDQMEALYRKKQKDKLREIRRKRKLQHAEPAASEEGKALLQDERF 471
            :  ::.|:.:|       :|||::.......:..|..|:....:..|.......:.|.:::..:.
  Fly   454 ENLQKDQDGKR-------RDPDKLPVALENVETQKELELENLPESSHNNKNLRVKEKEIVRQGKL 511

  Fly   472 KSVDSARFEKKGKGRSRATQEDTPTKPLKRLNKEKPVAQKGRADVKK 518
            |..:|.....|.....|..:.:||:|..|::.:   |.|.....|.|
  Fly   512 KETNSKAGGSKTNKTERRKKSNTPSKLQKQITE---VQQTPEITVNK 555

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dbp45A	NP_476927.1	SrmB	8..490	CDD:223587	121/534 (23%)
		DEADc	9..197	CDD:238167	55/189 (29%)
		Helicase_C	239..346	CDD:278689	36/131 (27%)
Gem3	NP_001261678.1	SrmB	24..541	CDD:223587	124/547 (23%)
		P-loop_NTPase	27..228	CDD:304359	59/222 (27%)
		Helicase_C	259..367	CDD:278689	33/108 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45451685
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840