DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CNT1 and SLC28A1

DIOPT Version :9

Sequence 1:NP_610447.2 Gene:CNT1 / 35915 FlyBaseID:FBgn0033371 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_011520505.1 Gene:SLC28A1 / 9154 HGNCID:11001 Length:692 Species:Homo sapiens


Alignment Length:540 Identity:200/540 - (37%)
Similarity:321/540 - (59%) Gaps:44/540 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 ETSEKPV-------PEVKPKLLCQ-----INW------CHGY-GFLIVLFILFY----ILWLYYW 125
            |.:.||.       |.::.:..|:     ..|      |.|. .||:|..:|.:    .|::...
Human    53 EAAPKPFSRWRNLQPALRARSFCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTC 117

  Fly   126 VFKPFVGIKLYNNYLEPVIDKWIAFSRQ-----WIVSGVMLAIVLAVVVAYLGFECRNDAYKAIG 185
            |...|:|.:|....|.|.:.:::.....     |...|:.||..|.:|: :|..:......:.:.
Human   118 VVLTFLGHRLLKRLLGPKLRRFLKPQGHPRLLLWFKRGLALAAFLGLVL-WLSLDTSQRPEQLVS 181

  Fly   186 LLGPVCFVLIGFAVSKHHLQVPWRIVTHGLLGQLLLGILCLRLPFGRSIFQCLGDKVTIFLNYAQ 250
            ..|...||.:.||.||||..|.||.|:.||..|.:||:|.:|...|...|:.||:::.|||:|.:
Human   182 FAGICVFVALLFACSKHHCAVSWRAVSWGLGLQFVLGLLVIRTEPGFIAFEWLGEQIRIFLSYTK 246

  Fly   251 HGARFVYGDRICDEYVFAFAILAVVFFFSVITSIMYYLGWMQFILNGFGFLLQAMVGTTVCESVN 315
            .|:.||:|:.:..: ||||.:|.::.|||.:.|::|::|.||:::....:|:|..:|||..|:::
Human   247 AGSSFVFGEALVKD-VFAFQVLPIIVFFSCVISVLYHVGLMQWVILKIAWLMQVTMGTTATETLS 310

  Fly   316 AAGNVFLSMTESPLVIRPYIEILTVSELHAICTSGYATVAGTVLGAYVSFGASASFLIAASVMAA 380
            .|||:|:|.||:||:||||:..:|:||:|.:.|.||||:||::||||:|||..|:.|||||||||
Human   311 VAGNIFVSQTEAPLLIRPYLADMTLSEVHVVMTGGYATIAGSLLGAYISFGIDATSLIAASVMAA 375

  Fly   381 PGSLAFAKLFYPETEES-LTRSDNIKLESSTDTSILDAAASGAAAALLIVLGIVSNIIAFLAIVF 444
            |.:||.:||.|||.||| ..|.:.:||......::::||::|||.::.:|..|.:|:|||||::.
Human   376 PCALALSKLVYPEVEESKFRREEGVKLTYGDAQNLIEAASTGAAISVKVVANIAANLIAFLAVLD 440

  Fly   445 FLDAVTEWIFELIGLHNITLLYILSQIFIPIVFVMGVPWHDCQAIGLVVAQKSFINEFVAYRNLG 509
            |::|...|:.:::.:..::...|.|.|..|:.|:|||.|.||..:..::..|.|:||||||::|.
Human   441 FINAALSWLGDMVDIQGLSFQLICSYILRPVAFLMGVAWEDCPVVAELLGIKLFLNEFVAYQDLS 505

  Fly   510 IL-----------VSDKK--VDPRSAAIATFALCGFANPGSLGIVIASLSAMAPSRRSDITRVAF 561
            ..           |.|:|  :..|:..:.|||||||||..|:||::..|::|.|.|:||.:::..
Human   506 KYKQRRLAGAEEWVGDRKQWISVRAEVLTTFALCGFANFSSIGIMLGGLTSMVPQRKSDFSQIVL 570

  Fly   562 RSYFAGSFVSFTSASLAGIL 581
            |:.|.|:.||..:|.:||||
Human   571 RALFTGACVSLVNACMAGIL 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNT1NP_610447.2 nupC 184..581 CDD:273278 172/410 (42%)
Nucleos_tra2_N 188..257 CDD:280026 30/68 (44%)
Gate 271..366 CDD:284976 44/94 (47%)
Nucleos_tra2_C 372..581 CDD:284970 89/222 (40%)
SLC28A1XP_011520505.1 nupC 179..590 CDD:273278 172/411 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165157001
Domainoid 1 1.000 188 1.000 Domainoid score I3309
eggNOG 1 0.900 - - E1_COG1972
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 378 1.000 Inparanoid score I2083
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG63093
OrthoDB 1 1.010 - - D251221at33208
OrthoFinder 1 1.000 - - FOG0001233
OrthoInspector 1 1.000 - - mtm8645
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10590
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4851
SonicParanoid 1 1.000 - - X691
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1413.900

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