DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CNT1 and Slc28a1

DIOPT Version :9

Sequence 1:NP_610447.2 Gene:CNT1 / 35915 FlyBaseID:FBgn0033371 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001004184.2 Gene:Slc28a1 / 434203 MGIID:3605073 Length:648 Species:Mus musculus


Alignment Length:535 Identity:203/535 - (37%)
Similarity:320/535 - (59%) Gaps:55/535 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 PEVKPKLLCQINW-----------CHGY-GFLIV-----------LFIL--FYILWLYYWVFKPF 130
            |.|:.:.||:.:|           ...| |||||           ||::  ..:::|.|.:.|..
Mouse    67 PTVQARSLCREHWQLFEWISKGLLSTAYIGFLIVACLLDFPRALALFVITCVVLVFLAYNLLKRL 131

  Fly   131 VGIKLYNNYLEPVIDKWIAFSRQ-----WIVSGVMLAIVLAVVVAYLGFECRNDAYKAIGLLGPV 190
            :|.||         .|.:.|...     |:..|:.||..|.|:: :|..:......:.:...|..
Mouse   132 LGSKL---------KKCVKFQGHSCLSLWLKRGLALAAGLGVIL-WLSLDTAQRPEQLVSFAGIC 186

  Fly   191 CFVLIGFAVSKHHLQVPWRIVTHGLLGQLLLGILCLRLPFGRSIFQCLGDKVTIFLNYAQHGARF 255
            .|:::.||.||||..|.||.|:.||..|.:||:..:|...|...||.|||::.:||:|.:.|:.|
Mouse   187 VFLVLLFAGSKHHRAVSWRAVSWGLGLQFVLGLFVIRTEPGFVAFQWLGDQIRVFLSYTEAGSSF 251

  Fly   256 VYGDRICDEYVFAFAILAVVFFFSVITSIMYYLGWMQFILNGFGFLLQAMVGTTVCESVNAAGNV 320
            |:|:.:..: ||||.:|.::.|||.:.|::||||.||:::....:|:|..:||:..|:::.|||:
Mouse   252 VFGEALVKD-VFAFQVLPIIVFFSCVMSVLYYLGLMQWVILKIAWLMQVTMGTSATETLSVAGNI 315

  Fly   321 FLSMTESPLVIRPYIEILTVSELHAICTSGYATVAGTVLGAYVSFGASASFLIAASVMAAPGSLA 385
            |:|.||:||:||||:..:|:||:|.:.|.||||:||::||||:|||..||.||||||||||.:||
Mouse   316 FVSQTEAPLLIRPYLADMTLSEVHVVMTGGYATIAGSLLGAYISFGIDASSLIAASVMAAPCALA 380

  Fly   386 FAKLFYPETEESLTRS-DNIKLESSTDTSILDAAASGAAAALLIVLGIVSNIIAFLAIVFFLDAV 449
            .:||.|||.|||..|| :.:||......::::||::|||.::.:|..|.:|:|||||::.|::|.
Mouse   381 LSKLVYPEVEESKFRSEEGVKLTYGDAQNLVEAASAGAAISVKVVANIAANLIAFLAVLAFINAA 445

  Fly   450 TEWIFELIGLHNITLLYILSQIFIPIVFVMGVPWHDCQAIGLVVAQKSFINEFVAYRNLGIL--- 511
            ..|:.:::.:..::...|.|.:..|:.|:|||.|.||..:..::..|.|:||||||:.|...   
Mouse   446 LSWLGDMVDIQGLSFQLICSYVLRPVAFLMGVAWEDCPVVAELLGIKLFLNEFVAYQELSQYKQR 510

  Fly   512 --------VSDKK--VDPRSAAIATFALCGFANPGSLGIVIASLSAMAPSRRSDITRVAFRSYFA 566
                    :.|||  :..|:..:.|:|||||||..|:||::..|::|.|.||||.:::..|:...
Mouse   511 RLAGAEEWLGDKKQWISVRAEILTTYALCGFANFSSIGIMLGGLTSMVPQRRSDFSQIVLRALIT 575

  Fly   567 GSFVSFTSASLAGIL 581
            |:|||..:|.:||||
Mouse   576 GAFVSLVNACVAGIL 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNT1NP_610447.2 nupC 184..581 CDD:273278 173/410 (42%)
Nucleos_tra2_N 188..257 CDD:280026 29/68 (43%)
Gate 271..366 CDD:284976 45/94 (48%)
Nucleos_tra2_C 372..581 CDD:284970 89/222 (40%)
Slc28a1NP_001004184.2 nupC 179..590 CDD:273278 173/411 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847401
Domainoid 1 1.000 190 1.000 Domainoid score I3256
eggNOG 1 0.900 - - E1_COG1972
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 376 1.000 Inparanoid score I2058
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG63093
OrthoDB 1 1.010 - - D251221at33208
OrthoFinder 1 1.000 - - FOG0001233
OrthoInspector 1 1.000 - - mtm8877
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10590
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4851
SonicParanoid 1 1.000 - - X691
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.900

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