DRSC/TRiP Functional Genomics Resources

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Protein Alignment CNT1 and Slc28a2

DIOPT Version :9

Sequence 1:NP_610447.2 Gene:CNT1 / 35915 FlyBaseID:FBgn0033371 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001343461.1 Gene:Slc28a2 / 269346 MGIID:1913105 Length:660 Species:Mus musculus


Alignment Length:501 Identity:198/501 - (39%)
Similarity:305/501 - (60%) Gaps:30/501 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 CQINWCHGYGFLIVLFILFYILWLYYWVFKPFVGIKLYNNYLEPV----IDKWIAFSRQWIVSGV 159
            |.:|:.......::..::.:||..::  .|.|.. |.....|:|:    ::.|        ...|
Mouse    99 CILNFQRALALFVITCLVIFILACHF--LKKFFP-KEQLRCLKPLENTHLNLW--------AKRV 152

  Fly   160 MLAIVLAVVVAYLGFECRNDAYKAIGLLGPVCFVLIGFAVSKHHLQVPWRIVTHGLLGQLLLGIL 224
            .:.:.:..::.:|..:......:.|...|...|:||.||.||||..|.||.|..||..|.:.|||
Mouse   153 FVGLSVVGLILWLALDTAQRPEQLISFAGICMFILILFACSKHHSAVCWRTVFWGLGLQFIFGIL 217

  Fly   225 CLRLPFGRSIFQCLGDKVTIFLNYAQHGARFVYGDRICDEYVFAFAILAVVFFFSVITSIMYYLG 289
            .:|...|.:.||.|||::.|||.|...|:.||:||.:. :.||||..|.::.||..:.||:||||
Mouse   218 VIRTEPGFNAFQWLGDQIQIFLAYTVEGSSFVFGDTLV-QNVFAFQSLPIIIFFGCVMSILYYLG 281

  Fly   290 WMQFILNGFGFLLQAMVGTTVCESVNAAGNVFLSMTESPLVIRPYIEILTVSELHAICTSGYATV 354
            .:|:::....:.||..:|||..|::..|||:|:.|||:||:||||:..:|:||:||:.|.|:||:
Mouse   282 LVQWVIQKVAWFLQITMGTTAAETLAVAGNIFVGMTEAPLLIRPYLADMTISEIHAVMTGGFATI 346

  Fly   355 AGTVLGAYVSFGASASFLIAASVMAAPGSLAFAKLFYPETEESLTRS-DNIKLESSTDTSILDAA 418
            |||||||::|||..||.||:|||||||.:||.:||.|||.|||..:| :.:||....:.:||:||
Mouse   347 AGTVLGAFISFGIDASSLISASVMAAPCALALSKLVYPEVEESKFKSKEGLKLPRGEERNILEAA 411

  Fly   419 ASGAAAALLIVLGIVSNIIAFLAIVFFLDAVTEWIFELIGLHNITLLYILSQIFIPIVFVMGVPW 483
            ::||..|:.:|..:.:|:|||||::.|::|...|:.|::.:|.::...|.|.:..|:||:|||.|
Mouse   412 SNGATDAISLVANVAANLIAFLAVLAFINATLSWLGEMVDIHGLSFQVICSYVLRPMVFMMGVQW 476

  Fly   484 HDCQAIGLVVAQKSFINEFVAYRNL---------GI---LVSDKK-VDPRSAAIATFALCGFANP 535
            .||..:..:|..|.||||||||:.|         |:   :..:|: :..::..|.||:||||||.
Mouse   477 ADCPLVAEIVGVKFFINEFVAYQQLSQYKNKRLSGVEEWINGEKQWISVKAEIITTFSLCGFANL 541

  Fly   536 GSLGIVIASLSAMAPSRRSDITRVAFRSYFAGSFVSFTSASLAGIL 581
            .|:||.:..|::|.|.|:||:.::..|:.|.|:.|||.||.:||||
Mouse   542 SSIGITLGGLTSMIPQRKSDLCKIVVRALFTGACVSFISACMAGIL 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNT1NP_610447.2 nupC 184..581 CDD:273278 184/410 (45%)
Nucleos_tra2_N 188..257 CDD:280026 33/68 (49%)
Gate 271..366 CDD:284976 46/94 (49%)
Nucleos_tra2_C 372..581 CDD:284970 93/222 (42%)
Slc28a2NP_001343461.1 nupC 176..587 CDD:273278 184/411 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847403
Domainoid 1 1.000 190 1.000 Domainoid score I3256
eggNOG 1 0.900 - - E1_COG1972
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20891
Inparanoid 1 1.050 376 1.000 Inparanoid score I2058
Isobase 1 0.950 - 0 Normalized mean entropy S5202
OMA 1 1.010 - - QHG63093
OrthoDB 1 1.010 - - D251221at33208
OrthoFinder 1 1.000 - - FOG0001233
OrthoInspector 1 1.000 - - mtm8877
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10590
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4851
SonicParanoid 1 1.000 - - X691
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.850

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