DRSC/TRiP Functional Genomics Resources

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Protein Alignment CNT1 and slc-28.1

DIOPT Version :9

Sequence 1:NP_610447.2 Gene:CNT1 / 35915 FlyBaseID:FBgn0033371 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_503967.1 Gene:slc-28.1 / 178770 WormBaseID:WBGene00017867 Length:568 Species:Caenorhabditis elegans


Alignment Length:552 Identity:176/552 - (31%)
Similarity:290/552 - (52%) Gaps:34/552 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 NRGSEATTESIDNSTEDDDDDDYDTEETSEKPVPEVKPKLLCQINWCHGYGFLIVLFI------- 115
            ::..|....|:..|:.:.:.:.|  :...:|..|.:.|..:......: :|:||...|       
 Worm     8 HQNKEKNLISVTKSSLEHNANFY--QRIYQKICPFIGPAAIVAFLLVY-HGYLIAAGIHNYQKAS 69

  Fly   116 -LFYILWLYYW---VFKPFVGIK----LYNNYLEPVIDKWIAFSRQWIVSGVMLAIVLAVVVAYL 172
             |.|:. |::|   |....||.|    :|.::...:.|  .|..|.::.....||.. ..:.||.
 Worm    70 PLIYVT-LFFWLCFVINFIVGTKNFKVVYADFAGKLND--FAKRRAFVPITFKLAFA-GALFAYT 130

  Fly   173 GFECRNDAYKAIGLLGPVCFVLIGFAVSKHHLQVPWRIVTHGLLGQLLLGILCLRLPFGRSIFQC 237
            ..|..::..:..|..|.|.||:.....|....::.|.|||..|:....|.::.|:.|.||..|..
 Worm   131 IVESLSEPTRLTGFGGYVFFVIFMVVFSNRPRKINWNIVTSALIFHYCLALIVLKWPTGRWFFDQ 195

  Fly   238 LGDKVTIFLNYAQHGARFVYG-----DRICD-EYVFAFAILAVVFFFSVITSIMYYLGWMQFILN 296
            |...:...|.|||.||:||:|     ..||| ..||.|..|..:.:||.:.::::|.|.:|..|.
 Worm   196 LSQLIIGLLEYAQVGAKFVFGFIAGPPNICDLAPVFIFTSLQTLIYFSAVVALLFYFGIIQIALK 260

  Fly   297 GFGFLLQAMVGTTVCESVNAAGNVFLSMTESPLVIRPYIEILTVSELHAICTSGYATVAGTVLGA 361
            ...:.::.::|||..|||.:....||..||:||||:||:|.||.|||.|:.|||::...|||..|
 Worm   261 KSTWFMKVLIGTTPVESVYSWACTFLGQTEAPLVIKPYLEKLTDSELFAVLTSGFSCTGGTVFAA 325

  Fly   362 YVSFGASASFLIAASVMAAPGSLAFAKLFYPETEESLTRSDNIKLESSTDTSILDAAASGAAAAL 426
            ||:.||....::.||:::||.|||.:||.|||.:|::.:.::.:|:...:....|...|...|.:
 Worm   326 YVALGACPESILTASILSAPMSLACSKLMYPEEQETIIKEEDFELDHENEKGFFDTLCSAGVALV 390

  Fly   427 LIVLGIVSNIIAFLAIVFFLDAVTEWIFELIGLHNITLLYILSQIFIPIVFVMGVPWHDCQAIGL 491
            ..|..|.:.::..::::..||.:..:|.:|||....:...:....|.|:.::||:..:..|.  |
 Worm   391 PTVFAIGATLVVVMSLLALLDQIFFYIGDLIGYDGWSFQMLFGYAFFPLAYIMGITNNSNQT--L 453

  Fly   492 VVAQ----KSFINEFVAYRNLGILVSDKKVDPRSAAIATFALCGFANPGSLGIVIASLSAMAPSR 552
            :|||    |:.:||||||..||.|..:.|:||:|..:||:|||||:|.||:||.:..:..:||.|
 Worm   454 LVAQLMGSKTAVNEFVAYDKLGQLQKEGKLDPKSVLVATYALCGFSNFGSMGIQMEVIGGLAPGR 518

  Fly   553 RSDITRVAFRSYFAGSFVSFTSASLAGILIQN 584
            ::..::|..|:..||:...|.:|::|||||.:
 Worm   519 KTVASKVMLRALCAGAIACFMNATVAGILISD 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNT1NP_610447.2 nupC 184..581 CDD:273278 145/406 (36%)
Nucleos_tra2_N 188..257 CDD:280026 24/68 (35%)
Gate 271..366 CDD:284976 39/94 (41%)
Nucleos_tra2_C 372..581 CDD:284970 71/212 (33%)
slc-28.1NP_503967.1 nupC 141..547 CDD:273278 145/407 (36%)
Nucleos_tra2_N 158..215 CDD:280026 20/56 (36%)
Gate 239..330 CDD:284976 38/90 (42%)
Nucleos_tra2_C 336..547 CDD:284970 71/212 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165217
Domainoid 1 1.000 160 1.000 Domainoid score I2462
eggNOG 1 0.900 - - E1_COG1972
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 317 1.000 Inparanoid score I1514
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG63093
OrthoDB 1 1.010 - - D251221at33208
OrthoFinder 1 1.000 - - FOG0001233
OrthoInspector 1 1.000 - - mtm4853
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10590
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X691
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.870

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