DRSC/TRiP Functional Genomics Resources

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Protein Alignment CNT1 and slc-28.2

DIOPT Version :9

Sequence 1:NP_610447.2 Gene:CNT1 / 35915 FlyBaseID:FBgn0033371 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001309639.1 Gene:slc-28.2 / 178769 WormBaseID:WBGene00017868 Length:575 Species:Caenorhabditis elegans


Alignment Length:561 Identity:194/561 - (34%)
Similarity:303/561 - (54%) Gaps:47/561 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 KECWPNRGSEATTESIDNSTEDDDDDDYDTEETSEKPVPEVKP-----KLLCQINWCHGYGFLIV 112
            ||....|....|::|:.|:.           ...||...:::|     .||..:...|  |||:.
 Worm    14 KENVLQRSCSLTSKSLQNNL-----------NIIEKFGQQIRPYFGIGSLLIFLVVYH--GFLVA 65

  Fly   113 LFI--------LFYILWLYYWV---FKPFVGIKLYNNYLEPVIDKWIAFSRQWIVSGVMLAIVLA 166
            ..|        |.|:. |::|:   ....||.|.:....:.|..|....:.|  ...|.|::.:|
 Worm    66 AGIHNYQKAAPLIYVT-LFFWICYLLNLIVGTKTFRAVYDDVGRKLEEITEQ--KKFVPLSLKIA 127

  Fly   167 VVVAYLGF---ECRNDAYKAIGLLGPVCFVLIGFAVSKHHLQVPWRIVTHGLLGQLLLGILCLRL 228
            .:.|.|.|   :..:|..:..|....|.::|..|..|.:.:::.|.:|:..|:....:.::.|:.
 Worm   128 FIFALLAFTIIDSIHDLTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYCVALIILKW 192

  Fly   229 PFGRSIFQCLGDKVTIFLNYAQHGARFVYG-----DRICD-EYVFAFAILAVVFFFSVITSIMYY 287
            ..|:..||...:.:..||.:||.||:||:|     ..||| ..||.|..|..:.:||.:.::::|
 Worm   193 STGQWFFQKFAELIVGFLEFAQVGAKFVFGFIAGPPNICDLAPVFIFTSLQTLIYFSAVVALLFY 257

  Fly   288 LGWMQFILNGFGFLLQAMVGTTVCESVNAAGNVFLSMTESPLVIRPYIEILTVSELHAICTSGYA 352
            .|.:|.:|....:.::.::|||..|||||....||.|:|:||::.||||.||.||:.||.|||:|
 Worm   258 FGIIQVVLQKSQWFMKVLIGTTPVESVNAWACTFLGMSEAPLMVAPYIEKLTDSEIFAIVTSGFA 322

  Fly   353 TVAGTVLGAYVSFGASASFLIAASVMAAPGSLAFAKLFYPETEESLTRSDNIKLESSTDTSILDA 417
            .|||||..|||:.||...:|:.||:::||.|||.:|:.:||||||..:.::.|||.:......|.
 Worm   323 CVAGTVFTAYVALGACPIYLLTASLLSAPMSLACSKIMFPETEESNVKEEDFKLEHNDKRGFFDT 387

  Fly   418 AASGAAAALLIVLGIVSNIIAFLAIVFFLDAVTEWIFELIGLHNITLLYILSQIFIPIVFVMGVP 482
            ..|...|.:..|..|.:.::..::::.|||||.|:|.:|||....|...:....|.|:.::||| 
 Worm   388 LCSAGVALVPTVFAIGATLVVIMSLLAFLDAVMEYIGDLIGYDGWTFQMLFGYAFFPLAYMMGV- 451

  Fly   483 WHDCQAIGLVVAQ----KSFINEFVAYRNLGILVSDKKVDPRSAAIATFALCGFANPGSLGIVIA 543
             :|.....|:|||    |:.:||||||.|||||....|:.|:|..|||:|||||:|..|:|:.|.
 Worm   452 -NDNSDQTLLVAQLMGTKTAVNEFVAYNNLGILQKAGKLQPKSVVIATYALCGFSNFSSMGMSIE 515

  Fly   544 SLSAMAPSRRSDITRVAFRSYFAGSFVSFTSASLAGILIQN 584
            .|..:|||:||.|:::..|:..|||...|.:|::|||||.:
 Worm   516 FLGGLAPSKRSTISKLVLRALCAGSIACFMNATVAGILISS 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNT1NP_610447.2 nupC 184..581 CDD:273278 158/406 (39%)
Nucleos_tra2_N 188..257 CDD:280026 18/68 (26%)
Gate 271..366 CDD:284976 43/94 (46%)
Nucleos_tra2_C 372..581 CDD:284970 86/212 (41%)
slc-28.2NP_001309639.1 nupC 147..553 CDD:273278 158/407 (39%)
Nucleos_tra2_N 154..221 CDD:280026 18/66 (27%)
Gate 245..336 CDD:284976 42/90 (47%)
Nucleos_tra2_C 341..553 CDD:284970 86/213 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165216
Domainoid 1 1.000 160 1.000 Domainoid score I2462
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 317 1.000 Inparanoid score I1514
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG63093
OrthoDB 1 1.010 - - D251221at33208
OrthoFinder 1 1.000 - - FOG0001233
OrthoInspector 1 1.000 - - mtm4853
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10590
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X691
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1212.010

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