DRSC/TRiP Functional Genomics Resources

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Protein Alignment CNT1 and Slc28a1

DIOPT Version :10

Sequence 1:NP_610447.2 Gene:CNT1 / 35915 FlyBaseID:FBgn0033371 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_446315.1 Gene:Slc28a1 / 116642 RGDID:621223 Length:648 Species:Rattus norvegicus


Alignment Length:535 Identity:198/535 - (37%)
Similarity:318/535 - (59%) Gaps:55/535 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 PEVKPKLLCQ-----INW-CHG------YGFLIVLFIL-------------FYILWLYYWVFKPF 130
            |.|:.:..|:     ..| |.|      .|||:|..:|             ..:::|.|.:.|..
  Rat    67 PTVQARSFCREHRQLFGWICKGLLSTACLGFLMVACLLDLQRALALLIITCVVLVFLAYDLLKRL 131

  Fly   131 VGIKLYNNYLEPVIDKWIAFSRQ-----WIVSGVMLAIVLAVVVAYLGFECRNDAYKAIGLLGPV 190
            :|.||         .:.:.|...     |:..|:.||..:.::: :|..:......:.:...|..
  Rat   132 LGSKL---------RRCVKFQGHSCLSLWLKRGLALAAGVGLIL-WLSLDTAQRPEQLVSFAGIC 186

  Fly   191 CFVLIGFAVSKHHLQVPWRIVTHGLLGQLLLGILCLRLPFGRSIFQCLGDKVTIFLNYAQHGARF 255
            .|:::.||.||||..|.||.|:.||..|.:||:..:|...|...||.|||::.:||:|.:.|:.|
  Rat   187 VFLVLLFAGSKHHRAVSWRAVSWGLGLQFVLGLFVIRTEPGFIAFQWLGDQIQVFLSYTEAGSSF 251

  Fly   256 VYGDRICDEYVFAFAILAVVFFFSVITSIMYYLGWMQFILNGFGFLLQAMVGTTVCESVNAAGNV 320
            |:|:.:..: ||||.:|.::.|||.:.|::||||.||:::....:|:|..:||:..|:::.|||:
  Rat   252 VFGEALVKD-VFAFQVLPIIIFFSCVMSVLYYLGLMQWVILKIAWLMQVTMGTSATETLSVAGNI 315

  Fly   321 FLSMTESPLVIRPYIEILTVSELHAICTSGYATVAGTVLGAYVSFGASASFLIAASVMAAPGSLA 385
            |:|.||:||:||||:..:|:||:|.:.|.||||:||::||||:|||..|:.||||||||||.:||
  Rat   316 FVSQTEAPLLIRPYLADMTLSEVHVVMTGGYATIAGSLLGAYISFGIDAASLIAASVMAAPCALA 380

  Fly   386 FAKLFYPETEESLTRSDN-IKLESSTDTSILDAAASGAAAALLIVLGIVSNIIAFLAIVFFLDAV 449
            .:||.|||.|||..||:| :||......::|:||::|||.::.:|..|.:|:|||||::.|::|.
  Rat   381 LSKLVYPEVEESKFRSENGVKLTYGDAQNLLEAASAGAAISVKVVANIAANLIAFLAVLAFVNAA 445

  Fly   450 TEWIFELIGLHNITLLYILSQIFIPIVFVMGVPWHDCQAIGLVVAQKSFINEFVAYRNLGIL--- 511
            ..|:.:::.:..::...|.|.:..|:.|:|||.|.||..:..::..|.|:||||||:.|...   
  Rat   446 LSWLGDMVDIQGLSFQLICSYVLRPVAFLMGVAWEDCPVVAELLGIKFFLNEFVAYQELSQYKQR 510

  Fly   512 --------VSDKK--VDPRSAAIATFALCGFANPGSLGIVIASLSAMAPSRRSDITRVAFRSYFA 566
                    :.|||  :..|:..:.|:|||||||..|:||::..|:::.|.||||.:::..|:...
  Rat   511 RLAGAEEWLGDKKQWISVRAEILTTYALCGFANFSSIGIMLGGLTSLVPQRRSDFSQIVLRALIT 575

  Fly   567 GSFVSFTSASLAGIL 581
            |:|||..:|.:||||
  Rat   576 GAFVSLLNACVAGIL 590

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNT1NP_610447.2 NupC 184..582 CDD:441575 175/412 (42%)
Slc28a1NP_446315.1 nupC 179..590 CDD:273278 173/411 (42%)

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