DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CNT1 and slc28a2

DIOPT Version :9

Sequence 1:NP_610447.2 Gene:CNT1 / 35915 FlyBaseID:FBgn0033371 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_002934615.3 Gene:slc28a2 / 100496776 XenbaseID:XB-GENE-965932 Length:647 Species:Xenopus tropicalis


Alignment Length:587 Identity:214/587 - (36%)
Similarity:329/587 - (56%) Gaps:80/587 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 TEDD--DDDDYDT--EETSEKPVPEVKPKL----------------------------------- 97
            :||:  .:|||..  |...|.|..:|..|:                                   
 Frog    14 SEDETASNDDYSVVIEAPPENPKTDVWSKVSKPFDASEKFIKKHRNILKYIVIGILCAGFAAYFI 78

  Fly    98 -LCQINWCHGYGFLIVLFILFYILWLYYWVFKPFVGIKLYNNYLEPV------IDKWIAFSRQWI 155
             .|.:|:......:::..::.:  :|.|.:.|...| |....:|.||      ..||:    :| 
 Frog    79 AACVLNFNRAVALVVITCVVLF--FLGYDLVKKLYG-KHIMRFLRPVGSCLKKNKKWL----KW- 135

  Fly   156 VSGVMLAIVLAVVVAYLGFECRNDAYKAIGLLGPVCFVLIGFAVSKHHLQVPWRIVTHGLLGQLL 220
               |...:|||.::|:|..:......:.|...|...|:||.|.:||||..|.||.|..||..:.:
 Frog   136 ---VFCILVLAGLIAWLVIDTSKRPEQLISFGGVCMFILILFVLSKHHRAVSWRAVFWGLGLEFV 197

  Fly   221 LGILCLRLPFGRSIFQCLGDKVTIFLNYAQHGARFVYGDRICDEYVFAFAILAVVFFFSVITSIM 285
            |||..:|...|...|:.:|:::.|||||...|:.||:|..:..: ||||..|.:|.|||.:.|::
 Frog   198 LGIFIIRTEPGYQAFKFVGEQIQIFLNYTTAGSGFVFGTALIQD-VFAFQALPIVVFFSCVMSVL 261

  Fly   286 YYLGWMQFILNGFGFLLQAMVGTTVCESVNAAGNVFLSMTESPLVIRPYIEILTVSELHAICTSG 350
            ||:|.||:::....:|:|..:|||..||::.|||:|:..||:||:||||:..:|.||:||:.|.|
 Frog   262 YYVGLMQYVILKISWLMQITMGTTATESLSVAGNIFVGQTEAPLLIRPYLPDMTKSEIHAVMTGG 326

  Fly   351 YATVAGTVLGAYVSFGASASFLIAASVMAAPGSLAFAKLFYPETEES-LTRSDNIKLESSTDTSI 414
            :.|:||:|||||:|||..||.||||||||||.:||.:||.||||||| ....:.:.:|...:.::
 Frog   327 FGTIAGSVLGAYISFGIDASSLIAASVMAAPCALALSKLVYPETEESKFKNEEGVIIEKGEERNV 391

  Fly   415 LDAAASGAAAALLIVLGIVSNIIAFLAIVFFLDAVTEWIFELIGLHNITLLYILSQIFIPIVFVM 479
            |:||::||:|::.:|..|.:|:|||:|::.|::|...|:..::....:||..|||.||:||.|:|
 Frog   392 LEAASNGASASVGLVANIAANLIAFMALLEFINAAFSWLGGMVNYPKLTLQLILSYIFMPIAFMM 456

  Fly   480 GVPWHDCQAIGLVVAQKSFINEFVAYR------NLGILVSDKKVD-------PRSAAIATFALCG 531
            ||.|.:...:|.::..|..:|||||||      ||.:..:::.:|       .|:..|.|:||||
 Frog   457 GVRWDEADKVGEMLGTKIILNEFVAYRQLAEYKNLRLSGTEEWIDGQRQWISERAEVITTYALCG 521

  Fly   532 FANPGSLGIVIASLSAMAPSRRSDITRVAFRSYFAGSFVSFTSASLAGIL-----IQN---EYTG 588
            |||..|:||::..||:||..|:.|:.:|..|:...|:.|||.:|.:||||     |:|   ..|.
 Frog   522 FANFSSIGIMLGGLSSMATERKGDLAKVVLRALLTGACVSFVNACVAGILFSPRVIENCKDLLTS 586

  Fly   589 GN 590
            ||
 Frog   587 GN 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNT1NP_610447.2 nupC 184..581 CDD:273278 178/410 (43%)
Nucleos_tra2_N 188..257 CDD:280026 29/68 (43%)
Gate 271..366 CDD:284976 46/94 (49%)
Nucleos_tra2_C 372..581 CDD:284970 92/222 (41%)
slc28a2XP_002934615.3 nupC 160..571 CDD:273278 178/411 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 187 1.000 Domainoid score I3281
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20891
Inparanoid 1 1.050 382 1.000 Inparanoid score I2007
OMA 1 1.010 - - QHG63093
OrthoDB 1 1.010 - - D251221at33208
OrthoFinder 1 1.000 - - FOG0001233
OrthoInspector 1 1.000 - - mtm9539
Panther 1 1.100 - - O PTHR10590
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X691
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.080

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