DRSC/TRiP Functional Genomics Resources

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Protein Alignment CNT1 and slc28a3

DIOPT Version :9

Sequence 1:NP_610447.2 Gene:CNT1 / 35915 FlyBaseID:FBgn0033371 Length:590 Species:Drosophila melanogaster
Sequence 2:XP_002935023.2 Gene:slc28a3 / 100492606 XenbaseID:XB-GENE-986047 Length:683 Species:Xenopus tropicalis


Alignment Length:502 Identity:206/502 - (41%)
Similarity:311/502 - (61%) Gaps:25/502 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 CQINWCHGYG-FLIVLFILFYILW-LYYWVFKPFVGIKLYNNYLEPVIDKWIAFSRQWIVSGVML 161
            |.:|:..... |::.|..:|::.| |:...::..: :||::.........|  |..:|:   :.:
 Frog   112 CVLNFRRALALFVLTLLGIFFVFWDLFMDRYEGKI-VKLFSPIGTFTKKHW--FWMKWV---IWI 170

  Fly   162 AIVLAVVVAYLGFE-CRNDAYKAIGLLGPVCFVLIGFAVSKHHLQVPWRIVTHGLLGQLLLGILC 225
            ::| |.|:.:|.|: .:..|.:.|...|.|.:||:.|..|||..:|.||.|..|:..|.|||:|.
 Frog   171 SLV-AGVICWLIFDTAKMGANQLISFGGLVMYVLLMFIFSKHPTKVRWRQVFWGIGLQFLLGLLI 234

  Fly   226 LRLPFGRSIFQCLGDKVTIFLNYAQHGARFVYGDRICDEYVFAFAILAVVFFFSVITSIMYYLGW 290
            ||...|...|..||.:|..||.|:..||.||:|::..|.: |||.:|.:|.|||.|.|::||:|:
 Frog   235 LRTKPGFDAFDWLGIQVQTFLEYSNTGAMFVFGEKYLDHF-FAFKVLPIVIFFSTIMSMLYYMGF 298

  Fly   291 MQFILNGFGFLLQAMVGTTVCESVNAAGNVFLSMTESPLVIRPYIEILTVSELHAICTSGYATVA 355
            ||:::...|:.:|..:||:..||:.||||:|:..|||||:||||:|:||.||:|||.|:|:||:|
 Frog   299 MQWLIKKVGWFMQKTMGTSPTESLVAAGNIFVGQTESPLLIRPYLELLTRSEIHAIMTAGFATIA 363

  Fly   356 GTVLGAYVSFGASASFLIAASVMAAPGSLAFAKLFYPETEE-SLTRSDNIKLESSTDTSILDAAA 419
            |:|||||:|||.|:|.|:.||||:||.:||.:|||:||||. .:.....:|||.....:||:||:
 Frog   364 GSVLGAYISFGVSSSHLLTASVMSAPAALAVSKLFWPETEPIKVNMKHGMKLEKGEARNILEAAS 428

  Fly   420 SGAAAALLIVLGIVSNIIAFLAIVFFLDAVTEWIFELIGLHNITLLYILSQIFIPIVFVMGVPWH 484
            .||:|::.:|..|..|::|||:::.|.:|...|:..:.....::...|.|.:|:|..|:|||.|.
 Frog   429 QGASASIPLVANIAVNLMAFLSLLAFFNAALSWLGNMFDYPQLSFEVICSYVFMPFSFMMGVDWE 493

  Fly   485 DCQAIGLVVAQKSFINEFVAYRNLGILVSDKK-------------VDPRSAAIATFALCGFANPG 536
            |...:|.::..|:|.||||||..|..|::.:|             :..||..|||:|||||||.|
 Frog   494 DSFIVGKLIGYKTFFNEFVAYEYLAGLINKRKESGPMYIEGIKQYMSIRSETIATYALCGFANFG 558

  Fly   537 SLGIVIASLSAMAPSRRSDITRVAFRSYFAGSFVSFTSASLAGILIQ 583
            ||||.|..||:|||||:.||...|.|:..||:...|.:|.:||:|.|
 Frog   559 SLGITIGGLSSMAPSRKGDIASGAIRAMIAGTVACFMTACIAGLLTQ 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CNT1NP_610447.2 nupC 184..581 CDD:273278 186/410 (45%)
Nucleos_tra2_N 188..257 CDD:280026 31/68 (46%)
Gate 271..366 CDD:284976 52/94 (55%)
Nucleos_tra2_C 372..581 CDD:284970 92/222 (41%)
slc28a3XP_002935023.2 nupC 192..603 CDD:273278 186/411 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 187 1.000 Domainoid score I3281
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 382 1.000 Inparanoid score I2007
OMA 1 1.010 - - QHG63093
OrthoDB 1 1.010 - - D251221at33208
OrthoFinder 1 1.000 - - FOG0001233
OrthoInspector 1 1.000 - - mtm9539
Panther 1 1.100 - - O PTHR10590
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X691
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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