DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8197 and lrrc34

DIOPT Version :10

Sequence 1:NP_610445.1 Gene:CG8197 / 35912 FlyBaseID:FBgn0033369 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_001373409.2 Gene:lrrc34 / 556175 ZFINID:ZDB-GENE-091118-73 Length:410 Species:Danio rerio


Alignment Length:323 Identity:74/323 - (22%)
Similarity:130/323 - (40%) Gaps:39/323 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 RYHCIRDLRIIVNYLLRRPQLSVQISSLVVSNWDAGLLKDFVRSLLPVWYIELRLMRFPREFFVM 124
            ||:||.|...:....|.:...|:|...|:.::.:|...:...:||                    
Zfish    73 RYNCITDKGAVHIAHLIQDSKSLQSLDLMCNDIEADGAEVIAKSL-------------------- 117

  Fly   125 LRLNAAKMNVSQLSLEGTPLTDEDVRILREFLLVSKTLRRLNVSSCSL-TQFNFALIADGVYKSP 188
                ...:.:..|.:.|..:.::....|...|.::.||..::||.|.| ||   ::||..:....
Zfish   118 ----HKNITLKTLRMTGNKIGNQGAMQLATMLQINATLEEVDVSDCDLATQ---SVIAFAIVLMN 175

  Fly   189 GVRRLSANRLLGMSLSLDTEKISSVLSSLLMQNTLWALSLEHCELTAQDMIPIAEHLARTNSKFR 253
            ..|..:.|....:..||..|....:...|::.|||..|.:...::|...:..:.|.|.| |...|
Zfish   176 NKRICAINVSRPLLFSLQEETTVHMAQMLVVNNTLKELHMGKHDMTDTGVETLCEALKR-NISLR 239

  Fly   254 RLRIACNKIGPDGAFFLLRGMSMGGNLELLDLSYCSIGTHGGEWVAKYLASC-----RRLQVLHL 313
            .|.:.||:|..|||..|...:....:||:||||:..|...|    |.:|:..     .:|:.|.:
Zfish   240 YLDLCCNRITRDGAKHLSEVLKQNCSLEILDLSFNRIEDDG----AIHLSEAIKLPHSKLKALSV 300

  Fly   314 NYNDMGPTAVNLILLAMKKQCKLEKLTLYGNHFDSRTAMIVRRLLDAEVVLHSELDIS-YTYD 375
            ..|.:....:..:..||:....|..:.::||..:.........|:.:..:|....|:| |..|
Zfish   301 TSNKIRKGGLLSLSAAMRVNSSLTHIYIWGNKHEEPVCEAFSGLMSSGRLLKEHTDVSPYEVD 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8197NP_610445.1 RNA1 <133..345 CDD:444072 55/217 (25%)
leucine-rich repeat 202..220 CDD:275380 4/17 (24%)
leucine-rich repeat 223..251 CDD:275380 7/27 (26%)
leucine-rich repeat 252..279 CDD:275380 9/26 (35%)
leucine-rich repeat 280..307 CDD:275380 10/31 (32%)
leucine-rich repeat 308..335 CDD:275380 5/26 (19%)
leucine-rich repeat 336..357 CDD:275380 3/20 (15%)
lrrc34NP_001373409.2 None

Return to query results.
Submit another query.