DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8197 and Nod2

DIOPT Version :9

Sequence 1:NP_001286225.1 Gene:CG8197 / 35912 FlyBaseID:FBgn0033369 Length:387 Species:Drosophila melanogaster
Sequence 2:XP_038953498.1 Gene:Nod2 / 291912 RGDID:1306368 Length:1012 Species:Rattus norvegicus


Alignment Length:337 Identity:79/337 - (23%)
Similarity:127/337 - (37%) Gaps:71/337 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 NYLLRR--PQLSVQISSL-----------------VVSNWDAGLLKDFVRSLLPVWYIELR---- 113
            |.||.|  |.|.:|.|.:                 :.:.:.||||....|.||....:..|    
  Rat   610 NSLLLRLLPNLCIQGSRVKGGQAALLQKAEPHNLQITAAFLAGLLSQQHRDLLAACQVPERVLLQ 674

  Fly   114 --------LMRFPREFFVMLRLNAAKMNVSQLSLEGTPLTDEDVRILREFLLVSKTLRRLNVSSC 170
                    |....||.|..:.........|..::.|.......:..::|..|..:.:|||::...
  Rat   675 RQARARSCLAHSLREHFHSIPPAVPGETKSMHAMPGFIWLIRSLYEMQEVQLAREAVRRLDIGHL 739

  Fly   171 SLT-------------------------QFNFALIADGVYKSPGVRRLSANRLLGM--SLSLDTE 208
            .||                         |.:...:.|     .||.:|..  .||:  :|.|...
  Rat   740 KLTFCRVGPAECAALAFVLQHLQRPVALQLDHNSVGD-----VGVEQLLP--CLGVCTALYLRDN 797

  Fly   209 KIS-----SVLSSLLMQNTLWALSLEHCELTAQDMIPIAEHLARTNSKFRRLRIACNKIGPDGAF 268
            .||     :::...|....|..|:|.:.:||......:|:.||. ...|..||:..|.|...||.
  Rat   798 NISDRGARTLVECALRCEQLQKLALFNNKLTDGCASSVAKLLAH-KQNFLSLRVGNNHITAAGAE 861

  Fly   269 FLLRGMSMGGNLELLDLSYCSIGTHGGEWVAKYLASCRRLQVLHLNYNDMGPTAVNLILLAMKKQ 333
            .|.:|:....:|:.|.....|:|..|.:.:|:.:|..:||:.|.|..|::|....:.:.|.::|.
  Rat   862 VLAQGLKSNTSLQFLGFWGNSVGDKGSQALAEVVADHQRLKWLSLVGNNIGSVGAHALALMLEKN 926

  Fly   334 CKLEKLTLYGNH 345
            ..||:|.|..||
  Rat   927 KSLEELCLEENH 938

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8197NP_001286225.1 leucine-rich repeat 134..161 CDD:275381 4/26 (15%)
LRR_RI 137..374 CDD:238064 58/241 (24%)
leucine-rich repeat 162..189 CDD:275381 7/51 (14%)
leucine-rich repeat 202..220 CDD:275380 5/22 (23%)
leucine-rich repeat 223..251 CDD:275380 8/27 (30%)
leucine-rich repeat 252..279 CDD:275380 9/26 (35%)
leucine-rich repeat 280..307 CDD:275380 7/26 (27%)
leucine-rich repeat 308..335 CDD:275380 7/26 (27%)
leucine-rich repeat 336..357 CDD:275380 6/10 (60%)
Nod2XP_038953498.1 DD 7..87 CDD:417479
DD 107..186 CDD:417479
NACHT 266..436 CDD:399032
NOD2_WH 518..574 CDD:407651
NLRC4_HD2 576..729 CDD:407648 24/118 (20%)
LRR_RI <752..984 CDD:423007 50/195 (26%)
leucine-rich repeat 786..816 CDD:275380 7/29 (24%)
leucine-rich repeat 817..844 CDD:275380 8/27 (30%)
leucine-rich repeat 845..872 CDD:275380 9/26 (35%)
leucine-rich repeat 873..900 CDD:275380 7/26 (27%)
leucine-rich repeat 901..928 CDD:275380 7/26 (27%)
leucine-rich repeat 929..953 CDD:275380 6/10 (60%)
leucine-rich repeat 957..978 CDD:275380
leucine-rich repeat 979..1006 CDD:275380
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4308
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.