DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8197 and Nlrp4b

DIOPT Version :10

Sequence 1:NP_610445.1 Gene:CG8197 / 35912 FlyBaseID:FBgn0033369 Length:387 Species:Drosophila melanogaster
Sequence 2:NP_766069.1 Gene:Nlrp4b / 210045 MGIID:3056570 Length:863 Species:Mus musculus


Alignment Length:214 Identity:56/214 - (26%)
Similarity:104/214 - (48%) Gaps:33/214 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 QISSLVVSNWDAGLLK----DFVRSLLPVWYIELR--------LMRFPREFFVMLRL---NAAKM 132
            ||.|:.:.|.|...|:    .|...:..::|..|:        |:.:...|....||   .....
Mouse   620 QICSVFLRNKDIKTLRIEDTIFNEPVFKIFYSYLKNSSCILKTLVAYNVSFLCDKRLFLELIQSY 684

  Fly   133 NVSQLSLEGTPLTDEDVRILREFLLVSK-TLRRLNVSSCSLTQFNFALIADGVYKSPGVR--RLS 194
            |:.:|.|.||.|:..||.:|.:.|..:: .:|.|::::|||.:.::..::|.:.::..:|  .:|
Mouse   685 NLEELYLRGTFLSHSDVEMLCDILNQAECNIRILDLANCSLCEHSWDYLSDVLRQNKSLRYLNIS 749

  Fly   195 ANRLLGMSLSLDTEKISSVLSSLLMQNT-LWALSLEHCELTAQDMIPIAEHLARTNSKF---RRL 255
            .|       :|..|.:.::..:|.:.|: |.:||||.|:||.    ...:.||.|.:::   ||:
Mouse   750 YN-------NLKDEGLKALCRALTLPNSALHSLSLEACQLTG----ACCKDLASTFTRYKCLRRI 803

  Fly   256 RIACNKIGPDGAFFLLRGM 274
            .:|.|.:|..|.|.|.:.|
Mouse   804 NLAKNSLGFSGLFVLCKAM 822

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8197NP_610445.1 RNA1 <133..345 CDD:444072 43/149 (29%)
leucine-rich repeat 202..220 CDD:275380 3/17 (18%)
leucine-rich repeat 223..251 CDD:275380 11/27 (41%)
leucine-rich repeat 252..279 CDD:275380 9/26 (35%)
leucine-rich repeat 280..307 CDD:275380
leucine-rich repeat 308..335 CDD:275380
leucine-rich repeat 336..357 CDD:275380
Nlrp4bNP_766069.1 Pyrin_NALPs 10..93 CDD:260032
NACHT 145..311 CDD:428606
NOD2_WH 388..444 CDD:465501
NLRC4_HD2 446..562 CDD:465499
PPP1R42 601..834 CDD:455733 56/214 (26%)
LRR 1 618..643 7/22 (32%)
LRR 2 683..706 9/22 (41%)
leucine-rich repeat 686..709 CDD:275380 8/22 (36%)
leucine-rich repeat 715..742 CDD:275380 6/26 (23%)
LRR 3 717..740 5/22 (23%)
LRR 4 741..763 5/28 (18%)
LRR 5 765..782 8/16 (50%)
leucine-rich repeat 772..799 CDD:275380 11/30 (37%)
LRR 6 797..824 9/26 (35%)
leucine-rich repeat 800..821 CDD:275380 8/20 (40%)
LRR 7 843..863
Blue background indicates that the domain is not in the aligned region.

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