DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8197 and ciita

DIOPT Version :10

Sequence 1:NP_610445.1 Gene:CG8197 / 35912 FlyBaseID:FBgn0033369 Length:387 Species:Drosophila melanogaster
Sequence 2:XP_009297712.1 Gene:ciita / 100003537 ZFINID:ZDB-GENE-071116-6 Length:1143 Species:Danio rerio


Alignment Length:373 Identity:70/373 - (18%)
Similarity:129/373 - (34%) Gaps:82/373 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 IRDLRIIVNYLLRRPQLSVQ----------ISSLVVSNWDAGL---------------LKDFVRS 103
            :.|..::.|.:::..:..||          |:.|:.....:||               ::..:.|
Zfish   740 VNDKTVVANTMVQHKKRKVQGESQDVLQRFITGLIFQKTASGLSIIDSSVDLKAKRKAVEAHLES 804

  Fly   104 LLPVWYIELRLMRFPREFF--------VMLRLNAAKMNVSQLSLEGTPLTDEDVRILREFLLVSK 160
            :.|...:..||:    |.|        |.......|.....||..||.|:..||.::...|..:.
Zfish   805 MKPKDLVPARLL----ELFHCVYETCSVKFAQGLVKNLPDDLSFCGTQLSPSDVYVICHILQHAS 865

  Fly   161 TLRRLNVSSCSLTQFNFAL-IADGVYKSPGVRRLSANRLLG---------------MSLSLDTEK 209
            .::|           .|.: :.|......|::.|...:.:.               :..|.|...
Zfish   866 AMKR-----------TFTINLQDTCIPIRGLKELVGLKCIASFWAHAEDTIDLWEDLHQSNDELN 919

  Fly   210 ISSVLSSLLMQNTLWALSLEHCE-------------LTAQDMIPIAEHLARTNSKFRRLRIACN- 260
            :.|.:....: |.|.|....|.|             |...:::|..:.........::|..... 
Zfish   920 LKSAIEKFTL-NPLKATQGYHIESLPVLVQIHREKKLPTSELVPALDEGVPALRHLQKLEFGLGV 983

  Fly   261 KIGPDGAFFLLRGMSMGGNLELLDLSYCSIGTHGGEWVAKYLASCRRLQVLHLNYNDMGPTAVNL 325
            :.||:....::..:....:|..|||....||..|.|.::..|.....|::|.|:.|.:|...|..
Zfish   984 QNGPELFPKVIEVLPSLQSLLCLDLDKNHIGDSGAEKLSGVLHFLECLKLLILSQNLIGDAGVGK 1048

  Fly   326 ILLAMKKQCKLEKLTLYGNHF-DSRTAMIVRRLLDAEVVLHSELDISY 372
            :..|:.....|:.|.||||.. ||....:...|.|.:.:  .:||:.:
Zfish  1049 LAQALASVPSLQTLRLYGNAIADSGAEHLALALPDMKSL--QDLDVKF 1094

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8197NP_610445.1 RNA1 <133..345 CDD:444072 47/241 (20%)
leucine-rich repeat 202..220 CDD:275380 3/17 (18%)
leucine-rich repeat 223..251 CDD:275380 6/40 (15%)
leucine-rich repeat 252..279 CDD:275380 3/27 (11%)
leucine-rich repeat 280..307 CDD:275380 9/26 (35%)
leucine-rich repeat 308..335 CDD:275380 7/26 (27%)
leucine-rich repeat 336..357 CDD:275380 8/21 (38%)
ciitaXP_009297712.1 NACHT 346..>820 CDD:444362 13/83 (16%)
P-loop containing Nucleoside Triphosphate Hydrolases 429..598 CDD:476819
PPP1R42 806..1122 CDD:455733 61/307 (20%)
leucine-rich repeat 974..987 CDD:275381 1/12 (8%)
leucine-rich repeat 1003..1030 CDD:275380 9/26 (35%)
leucine-rich repeat 1031..1058 CDD:275380 7/26 (27%)
leucine-rich repeat 1059..1086 CDD:275380 10/26 (38%)
leucine-rich repeat 1087..1114 CDD:275380 2/10 (20%)
leucine-rich repeat 1115..1133 CDD:275380
Blue background indicates that the domain is not in the aligned region.

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