back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG8170 and Tmprss4

DIOPT Version :9

Sequence 1:	NP_610441.2	Gene:	CG8170 / 35908	FlyBaseID:	FBgn0033365	Length:	855	Species:	Drosophila melanogaster
Sequence 2:	XP_038937788.1	Gene:	Tmprss4 / 367074	RGDID:	1305033	Length:	478	Species:	Rattus norvegicus

Alignment Length:	255	Identity:	83/255 - (32%)
Similarity:	126/255 - (49%)	Gaps:	29/255 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly   599 CGISLAKQTAQRRIVGGDDAGFGSFPWQAYIRIGSSR-CGGSLISRRHVVTAGHCVARATPRQVH 662
            ||.|| |.|   |:|||.:|...|:|||..|:..... ||||::....::||.||..:      :
  Rat   237 CGKSL-KTT---RVVGGVEASADSWPWQVSIQYNKQHVCGGSILDHHWILTAAHCFRK------Y 291

  Fly   663 VTLGDYVINSAVEPL---PAYTFGVRRIDVHPYFKFTP---QADRFDISVLTLERTVHFMPHIAP 721
            :.:..:.:.:....|   |:       :.|...|...|   |....||:::.|:..:.|...:.|
  Rat   292 LDVSSWKVRAGSNKLGNSPS-------LPVAKIFIAEPNPLQPKEKDIALVKLKMPLTFSGSVRP 349

  Fly   722 ICLPEKNEDFLGKFG-WAAGWGALNPGSRLRPKTLQAVDVPVIENRICERWHRQNGINVVIYQEM 785
            ||||..:|:.:.... |..|||...........||....|.||::..|   :.::.....:...|
  Rat   350 ICLPFSDEELIPTMPVWVIGWGFTEENGGKMSDTLLQASVQVIDSARC---NAEDAYQGEVTAGM 411

  Fly   786 LCAGYRNGGKDSCQGDSGGPLMHDKNGRWYLIGVVSAGYSCASRGQPGIYHSVSKTVDWV 845
            ||||...||||:||||||||||:..: :|.::|:||.||.|.|...||:|..|:..:||:
  Rat   412 LCAGTPQGGKDTCQGDSGGPLMYHYD-KWQVVGIVSWGYGCGSPSTPGVYTKVTAYLDWI 470

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.