DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment babo and Amhr2

DIOPT Version :9

Sequence 1:NP_476999.1 Gene:babo / 35900 FlyBaseID:FBgn0011300 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_112260.1 Gene:Amhr2 / 29530 RGDID:70964 Length:557 Species:Rattus norvegicus


Alignment Length:526 Identity:153/526 - (29%)
Similarity:232/526 - (44%) Gaps:100/526 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 PENKIKC---HCDTCKESNNICETDGFCFTSVEKNSDGSIIFSYRCLHKSQIFPPG-RSIWCNDG 183
            |...|:|   ||               ||.........:.:....||...:   || .|:.|:. 
  Rat    49 PPKGIRCLYSHC---------------CFGIWNLTHGRAQVEMQGCLDSDE---PGCESLHCDP- 94

  Fly   184 LHGGPTARPVGRNGAHACCKDRDFCNRFL--WPKTKDQRSDRVEEGRQISVQDYVPHRLTSWEFV 246
               .|.|.|...:....|....||||...  .|.:.::.:...:|.:..........:|....|:
  Rat    95 ---VPRAHPSPSSTLFTCSCGTDFCNANYSHLPPSGNRGAPGPQEPQATPGGPIWMAQLLLGVFL 156

  Fly   247 AIILGATLFICFTGTSTWYYCQRRKRMASGRTFAKEDSAYDPILNGNTTIHDIIEMTTSGSG--- 308
            .::|...:....         ||:.....|.:    |...:|                 |||   
  Rat   157 VLLLSIIILALL---------QRKACRVQGGS----DPEPEP-----------------GSGGDC 191

  Fly   309 SAGLPLLVQRSIARQVQLCHVIGKGRFGEVWRGRWRGENVAVKIFSSREECSWFREAEIYQTVML 373
            |..||.|.      :::...||.:|....||.||.:||.||:|.|..|....:..|..:||.:.|
  Rat   192 SEELPELA------ELRFSQVIQEGGHAVVWAGRLQGEMVAIKAFPPRAVAQFRAERAVYQLLGL 250

  Fly   374 RHENILGFIAADNKDNGTW-TQLWLVTDYHENGSLFDYLTTHPVDTNTMLNMSLSIATGLAHLHM 437
            :|.:|:.||.|.....|.. :...||.:.:..|||..|||.:..|..:.|.|:||:|.|||.|| 
  Rat   251 QHNHIVRFITAGQGGPGPLPSGPLLVLELYPKGSLCHYLTQYTSDWGSSLRMALSLAEGLAFLH- 314

  Fly   438 DIVGTRG-----KPAIAHRDLKSKNILVKSNLSCAIGDLGLAVRHVEKNDSVDIPSTH------- 490
               |.|.     ||.||||||.|:|:|::.:.||||||||||:..........:..|.       
  Rat   315 ---GERWQDGQYKPGIAHRDLSSQNVLIREDRSCAIGDLGLALVLPGLAQPPALAPTQPRGPAAI 376

  Fly   491 -RVGTKRYMAPEVLDESMNDQHF-DSYKRADVYAFGLILWEIARRCNMGMIYD--------EYQL 545
             ..||:||||||:||::::.|.: .:.:|||||:..|:||||..||:     |        .:||
  Rat   377 LEAGTQRYMAPELLDKTLDLQDWGTALQRADVYSLALLLWEILSRCS-----DLRPDHRPPPFQL 436

  Fly   546 PYYDVVQPDPSIEEMKKVVCIEKCRPNIPNRWHASDV-LHNMAKVMKECWYPNPVARLTALRIKK 609
            .|...:..:||..|:..:...|:.|||||:.|..|.. ...:.:::::||..:|.|||||..:::
  Rat   437 AYEAELGSNPSACELWALAVAERKRPNIPSSWSCSATDPRGLRELLEDCWDADPEARLTAECVQQ 501

  Fly   610 TLASIS 615
            .||:::
  Rat   502 RLAALA 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
baboNP_476999.1 Activin_recp 127..214 CDD:279413 20/92 (22%)
GS 294..324 CDD:197743 7/32 (22%)
Pkinase_Tyr 324..611 CDD:285015 113/310 (36%)
STKc_TGFbR1_ACVR1b_ACVR1c 328..615 CDD:271045 115/310 (37%)
Amhr2NP_112260.1 Activin_recp <61..119 CDD:395845 16/64 (25%)
PKc_like 205..506 CDD:419665 115/309 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338289
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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