DRSC/TRiP Functional Genomics Resources

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Protein Alignment PAN2 and SDN3

DIOPT Version :10

Sequence 1:NP_610427.2 Gene:PAN2 / 35893 FlyBaseID:FBgn0033352 Length:1241 Species:Drosophila melanogaster
Sequence 2:NP_201525.2 Gene:SDN3 / 836859 AraportID:AT5G67240 Length:782 Species:Arabidopsis thaliana


Alignment Length:332 Identity:72/332 - (21%)
Similarity:125/332 - (37%) Gaps:86/332 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   900 DGTQKNLVSLINVQRPYHTMKLAESADDPQSQWYIFNDFSISPVSPQESVWFTLDWK-------- 956
            :|........:||    :..||..|..||..:   .||..::         |.|.:|        
plant    26 EGENGGWKEFLNV----YDKKLGSSLSDPARR---SNDVLVA---------FLLTFKKKEDLQLI 74

  Fly   957 ---VPC------ILFYRHVEDDSESASTTSSTVTESEETIPSESSSGSPTNLSNP-FLEEIVSPM 1011
               :.|      |..::....|.|:.......:|.:.:..|.        |.:.| :.|:.....
plant    75 ARVMQCGANRELIEKFKQETPDKETPEQRLVRLTITHDDYPG--------NYTFPSYAEDWYVTE 131

  Fly  1012 LGNLSADATLQPLQSDEMPQSGDLVAMDAEFVTLNPEENEIRPDGKTATIKPCHMSVARISCIRG 1076
            ||.          :..::.:|..::::|.|.||..        ||..|.::.            |
plant   132 LGK----------KKSKVIKSTRMLSIDCEMVTCE--------DGSQALVRV------------G 166

  Fly  1077 QGPAEGVPFMDDYISTQEKVVDYLTQFSGIKPGDLDANFSKKRLTALKYSYQ-KLKYLVDVGVIF 1140
            ....:....:|.::...:.|:||.|..:|:...||:      |.|......| ||:..:.||.|.
plant   167 AVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDLE------RATLSVADIQKKLRRFLSVGTIL 225

  Fly  1141 VGHGLKNDFRVINIYVPSEQIIDTVHLFHM---PHHRMVSLRFLAWHFLGTKIQSE--THDSIED 1200
            |||||.||.:|:.|  ...::|||.::|..   |..:..||..|....||.:::.:  .|:.:.|
plant   226 VGHGLHNDLQVLRI--DHARVIDTSYVFEFVDAPKTQRPSLNNLCKSVLGQEVRMDGAAHNCVHD 288

  Fly  1201 ARTTLQL 1207
            |...::|
plant   289 AAAAMKL 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PAN2NP_610427.2 WD40 63..>270 CDD:475233
WD40 repeat 148..183 CDD:293791
WD40 repeat 187..221 CDD:293791
WD40 repeat 227..273 CDD:293791
WD40 repeat 278..314 CDD:293791
UCH_1 505..940 CDD:463872 10/39 (26%)
zf-CCCH_2 799..816 CDD:464217
PAN2_exo 1036..1209 CDD:99846 47/178 (26%)
SDN3NP_201525.2 REX1_like 146..297 CDD:99848 47/178 (26%)
Blue background indicates that the domain is not in the aligned region.

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