DRSC/TRiP Functional Genomics Resources

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Protein Alignment PAN2 and SDN1

DIOPT Version :10

Sequence 1:NP_610427.2 Gene:PAN2 / 35893 FlyBaseID:FBgn0033352 Length:1241 Species:Drosophila melanogaster
Sequence 2:NP_190579.2 Gene:SDN1 / 824172 AraportID:AT3G50100 Length:409 Species:Arabidopsis thaliana


Alignment Length:350 Identity:75/350 - (21%)
Similarity:138/350 - (39%) Gaps:84/350 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   919 MKLAESAD--DPQSQW----YIFNDFSISPVSP-----QESVWFTLDWK-------VPC---ILF 962
            :||.:|.|  .....|    ::::..:.||..|     ::.|.|...:|       :.|   .|.
plant    17 VKLLQSRDLRGENGNWKEFLHVYDKNADSPSDPSRRSHEDLVQFLTTFKKKEDLQLLKCHANHLL 81

  Fly   963 YRHVEDDSESASTTSSTVTESEETIPSESSSGSPTNLSNPFLEEIVSPMLGNLSADATLQPLQSD 1027
            ..:::.:|:...|....:.......||.|...|    ..|:.|:.....:|          ::..
plant    82 IENLKQESQDEDTPEQMLVRLTVEHPSYSLDYS----FKPYSEDWFVSDVG----------MKMK 132

  Fly  1028 EMPQSGDLVAMDAEFVTLNPEENEIRPDGKTATIKPCHMSVARISCIRGQGPAEGVPFMDDYIST 1092
            ::.:|.::||:|.|.|        :..||....::.            |....:....:|:::..
plant   133 KVMESTNMVAVDCEMV--------LCEDGTEGLVRV------------GVVDRDLKVILDEFVKP 177

  Fly  1093 QEKVVDYLTQFSGIKPGDLD-ANFSKKRLTALKYSYQKLKYLVDVGVIFVGHGLKNDFRVINIYV 1156
            .:.||||.|..:||...|:: |:.|...:      .:.|:..:..|.|.|||.|..|..|:.|..
plant   178 NKPVVDYRTDITGITAEDIENASLSVVDI------QETLQPFLSTGTILVGHSLNRDLEVLKIDH 236

  Fly  1157 PSEQIIDTVHLFHMPHHRMV---SLRFLAWHFLGTKIQSE--THDSIEDAR-------------- 1202
            |  ::|||..:|..|:.|.:   ||..|....||.:::..  .||.:.||.              
plant   237 P--KVIDTALVFKYPNTRKLRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVVEKRV 299

  Fly  1203 -TTLQLYKHYLKLQEEKKFANALKN 1226
             ||::..|..|::::.|.|.:.:.|
plant   300 DTTIKPSKEMLEVEKAKLFLHKIPN 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PAN2NP_610427.2 WD40 63..>270 CDD:475233
WD40 repeat 148..183 CDD:293791
WD40 repeat 187..221 CDD:293791
WD40 repeat 227..273 CDD:293791
WD40 repeat 278..314 CDD:293791
UCH_1 505..940 CDD:463872 5/26 (19%)
zf-CCCH_2 799..816 CDD:464217
PAN2_exo 1036..1209 CDD:99846 47/193 (24%)
SDN1NP_190579.2 REX1_like 141..292 CDD:99848 45/178 (25%)
RRM_SF 317..377 CDD:409669 1/7 (14%)
Blue background indicates that the domain is not in the aligned region.

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