DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PAN2 and pan2

DIOPT Version :9

Sequence 1:NP_610427.2 Gene:PAN2 / 35893 FlyBaseID:FBgn0033352 Length:1241 Species:Drosophila melanogaster
Sequence 2:XP_005162402.1 Gene:pan2 / 792831 ZFINID:ZDB-GENE-030131-3113 Length:1206 Species:Danio rerio


Alignment Length:1283 Identity:521/1283 - (40%)
Similarity:720/1283 - (56%) Gaps:170/1283 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 GSAPGNGHFSPSFN-GFNIG-----------------TTDPE--------------YVELVPVLA 56
            |..||.|.::|..: |...|                 ..||:              |.||..|.|
Zfish     6 GLDPGLGDYAPGLHGGLEPGLDSSLDPRLDPALLQGVEIDPDGLAVSESVHIVEGMYSELHSVAA 70

  Fly    57 DGGEHFGVSSVAFDDYEELLWMGNQGGHVTSYYTNSMQKYTSFQVHATDIVRDISTLDSGVLALT 121
            :.|  ..|::..||..||||||||..||.:|::..:|.:|:|||||.||.:|.|.::|:|||.||
Zfish    71 EVG--IPVTATHFDLQEELLWMGNHRGHASSFFGPTMGRYSSFQVHMTDDIRHIQSMDTGVLFLT 133

  Fly   122 QTSLRHQIRRGLPKFTFKSNNMKEMVSMLQLSPHRLVMAGLQDELIDFDLRTLKETRIEHVGAGG 186
            :.:||...|.|...|.:......:|.|::....:.|:|.|||:.:.:.||.|::||:...|...|
Zfish   134 KNNLRCLTRGGFIMFDYPMEEGADMHSLILTENNTLLMGGLQNYVAELDLTTVQETQKFTVEVPG 198

  Fly   187 CTVLRKNSRYLFAGDQLGTVTLRDLNSLSVQHTIKTHTNILSDFSVQGNLLISCGYSGR-QNNLA 250
            ..::|:.||:.|.|...|.|:||||.:..::|.....:..||||.:.||||.:||:|.| .|.|:
Zfish   199 VAIMRQTSRFFFCGHTSGKVSLRDLRTFKMEHEFDAFSGSLSDFDIHGNLLAACGFSSRGLNGLS 263

  Fly   251 IDRFLMVYDLRMLRLIAPIQVMIDPQMLKFLPSLTSQLAVVSSYGQVQLVDTVELSEPRVSMYQI 315
            .|||||||||||:|.:.|:||.:||..|:|:|:.||:||::|..||.|..:...|:. ...::.:
Zfish   264 CDRFLMVYDLRMMRAVTPLQVHVDPLFLRFIPTYTSRLAIISQTGQCQFCEPTGLAS-LADIFHV 327

  Fly   316 NTNGSQCLSFDISSSSQAMAFGDQSGHINMIAAVQTPQPQFNLYSRSTEFA--DVVPQLPMVSIT 378
            ||.|...:|||:|||.||::|||..|.:::.::  .|:..:|.|||.||.|  .:|..||.:...
Zfish   328 NTVGQLLMSFDVSSSKQALSFGDSGGCVHLWSS--APEVSYNSYSRDTELALPCLVDSLPQMDWN 390

  Fly   379 DTNFPLSSVMLPHLTTGTQWFSDWPEELLRYRYHRPKTIDPEVLSNMKMQGPIGYSPNPRTARRN 443
            ....|||.:.:| ||:.....||||..|:.....|...:|||:|..||..|.|||:|||||..||
Zfish   391 HELMPLSLLPMP-LTSTEPLLSDWPTALIAPSPRRAPPVDPEILRTMKTVGFIGYAPNPRTRPRN 454

  Fly   444 QIPYVIEQGGVC---------SPNGNGTAAATKAENGVKIIPRRYRKVELKYTKLGTQDFDFDQH 499
            |:||.|:...:.         ||.|.      ..|..:.::|::||||.:||:|||.:||||..:
Zfish   455 QVPYKIKDVELDYDSYNQVPESPIGR------DEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHY 513

  Fly   500 NQTCFAGLEATLPNSYCNAMLQILYFTDALRVKLLEHSCIKEFCLSCELGFLFNMLDKSTASSPC 564
            |:|.|||||..:||:|||.|:|:|||.:.:|..:..|.|.|||||:|||||||:|||.| ...||
Zfish   514 NRTLFAGLEPHIPNAYCNCMIQVLYFLEPIRCLVQNHLCQKEFCLACELGFLFHMLDLS-RGDPC 577

  Fly   565 QASNFLRSFRTVPEASALGLILTD---RSSNVNLISLIQNWNRFILHQMHYEIFDSSKNASTYSG 626
            |||||||:|||:||||||||||.|   ::....|..|||:||||||.|:|.|..: .:....|.|
Zfish   578 QASNFLRAFRTIPEASALGLILADSDEQTGKARLGRLIQSWNRFILAQLHQETLE-QEGPQAYRG 641

  Fly   627 SVQTSTNAENAGSSETSGSSDLYDSISDENSKEDDRERSKINAETDISKIFGTKQICINRCIKCQ 691
                      |.||....||                      .|:.||::||.:....:.|. |.
Zfish   642 ----------ASSSSVLSSS----------------------GESVISRLFGCEVENSSLCC-CG 673

  Fly   692 EEKIKESILLACNLSYP--NHIKDSDQYFNFGTILKRSLSSEKSIQAFCERCKKFSPTNQSVKVT 754
            :|.::.|:.|...:.||  :.::...:.:.|..||::|:..|:|.||:|:.|:|:.||.|:..:.
Zfish   674 KETVRSSLTLLFTMHYPEQSSLEKKIEEYEFVDILRKSICLEQSTQAWCDNCEKYQPTVQTRNIR 738

  Fly   755 SLPQILSINCGLNNEKDITFLKRQ----LNRCSEKTTVDAAASLSTSKP-----CRYGANCSRSD 810
            .||.:|.|||.:|:.|:..|.|.|    .|:..:|   :||......:|     |.....|:...
Zfish   739 CLPDVLVINCEVNSAKEAEFWKAQTEYVFNKALKK---EAAEPPKPKEPLPTEWCLEEELCNVEG 800

  Fly   811 CHFMHPDRKSPSHTSQPNAVNNSPNGRQKSWFPLTFTMGINDQGEVQVQTQSDASSGKSEQEEET 875
            ..|                 :......:..|.||:..|.|:....::|       |..:|.||.|
Zfish   801 LTF-----------------DTQAEDMRHVWIPLSLRMCISKAQGLEV-------SSLTEGEELT 841

  Fly   876 EKPPTKGLDNNRMYALHAVVCQVDD-GTQKNLVSLINVQRPYHTMKLAESADDPQSQWYIFNDFS 939
            |....:|:.   :|.|...|..|.| .|..|:|:.|.|...||..|...:    ..|||:||||.
Zfish   842 ESEEAEGVS---IYDLFVTVSHVQDTRTGGNMVAHIKVGETYHQRKEGVT----HQQWYLFNDFL 899

  Fly   940 ISPVSPQESVWFTLDWKVPCILFY----RHVEDDSESASTTSSTVTESEETIPSESSSGSPTNLS 1000
            |.|:...|||.|.::||||.:|:|    .|.:.|....:...::|..:|.::..:..        
Zfish   900 IEPIDKAESVQFDVNWKVPAVLYYIKRNYHTKFDLRIKNPIEASVLLTEASLARKQR-------- 956

  Fly  1001 NPFLEEIVSPMLGNLSADATLQPLQSDEMPQSGDLVAMDAEFVTLNPEENEIRPDGKTATIKPCH 1065
                           .:.||..||...||||.||||.:||||||||.||.|:|.||..:||||..
Zfish   957 ---------------KSHATFIPLMVSEMPQVGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQ 1006

  Fly  1066 MSVARISCIRGQGPAEGVPFMDDYISTQEKVVDYLTQFSGIKPGDLDANFSKKRLTALKYSYQKL 1130
            ||||||:|:||||..|||||:||||||||:|||||||:||||||||||..|.|.||.||.:|.||
Zfish  1007 MSVARITCVRGQGQNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKL 1071

  Fly  1131 KYLVDVGVIFVGHGLKNDFRVINIYVPSEQIIDTVHLFHMPHHRMVSLRFLAWHFLGTKIQSETH 1195
            ::|:|.||.||||||:.||||||:.||.:|:||||:|||||..||:|||||||:||...||.|||
Zfish  1072 RFLIDTGVRFVGHGLQKDFRVINLMVPKDQVIDTVYLFHMPRKRMISLRFLAWYFLDLNIQGETH 1136

  Fly  1196 DSIEDARTTLQLYKHYLKLQE---EKKFANALKNLYERGKQLQWKVPE 1240
            ||||||||.||||:.||:|..   :::|...||.|||:|::|.||||:
Zfish  1137 DSIEDARTALQLYRKYLELSHNGGQEEFRKVLKALYEKGRKLDWKVPD 1184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PAN2NP_610427.2 WD40 63..>270 CDD:330360 89/207 (43%)
WD40 repeat 148..183 CDD:293791 11/34 (32%)
WD40 repeat 187..221 CDD:293791 12/33 (36%)
WD40 repeat 227..273 CDD:293791 29/46 (63%)
WD40 repeat 278..314 CDD:293791 12/35 (34%)
UCH_1 505..940 CDD:315986 154/449 (34%)
zf-CCCH_2 799..816 CDD:317060 4/21 (19%)
PAN2_exo 1036..1209 CDD:99846 124/172 (72%)
pan2XP_005162402.1 WD40 <204..>295 CDD:295369 44/90 (49%)
Peptidase_C19P 504..923 CDD:239137 173/487 (36%)
UCH_1 519..900 CDD:290159 154/449 (34%)
PAN2_exo 977..1150 CDD:99846 124/172 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587938
Domainoid 1 1.000 341 1.000 Domainoid score I1053
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5918
Inparanoid 1 1.050 871 1.000 Inparanoid score I395
OMA 1 1.010 - - QHG55598
OrthoDB 1 1.010 - - D128953at2759
OrthoFinder 1 1.000 - - FOG0004707
OrthoInspector 1 1.000 - - oto40750
orthoMCL 1 0.900 - - OOG6_102772
Panther 1 1.100 - - LDO PTHR15728
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R887
SonicParanoid 1 1.000 - - X3880
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1514.940

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