DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PAN2 and Rexo5

DIOPT Version :9

Sequence 1:NP_610427.2 Gene:PAN2 / 35893 FlyBaseID:FBgn0033352 Length:1241 Species:Drosophila melanogaster
Sequence 2:XP_011240147.1 Gene:Rexo5 / 434234 MGIID:1919402 Length:858 Species:Mus musculus


Alignment Length:463 Identity:111/463 - (23%)
Similarity:169/463 - (36%) Gaps:133/463 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   859 QTQSDASSGK-------SEQEEETEKPPTKGLDNN---RMYALHAVV----CQVDDGTQKNLVSL 909
            |.:.:|:|.|       |....|.:.||:...|..   :...|..::    |:|   |.:.|..|
Mouse     3 QEKEEANSRKRKEAPNSSASATERDGPPSHIQDREPQAKKARLSTILFTDNCEV---THRQLCEL 64

  Fly   910 INVQRPYHTMKLAESADDPQSQW-------------------------YIF------------ND 937
            :..      ..|.:|| .|:..|                         |.|            :.
Mouse    65 LKY------AVLGKSA-VPKPSWCQLSHQKQLNNVVVFILKGMSQLHFYRFYLEFRFLRKTFRHK 122

  Fly   938 FSISPVSPQESVWFT---LDWKVPCILFYRHVEDDSESASTTSSTVTESEETIPSESSSGSPTNL 999
            ||:.  ||..|..|.   |..|.....|.|.||....||:..||...:::..|  :........|
Mouse   123 FSLP--SPTSSFLFDIIGLQKKKSARSFRRTVEGPLISATLRSSIDLQNDPII--QKYGYKNVGL 183

  Fly  1000 SNPFL--EEIVS---PMLGNLSADATLQPLQSDEMPQSGDLVAMDAEFVTLNPEENEIRPDGKTA 1059
            :...|  ||:.:   |:.|:.:.:..:....:..:..|..|..:|.| |.|.....|:       
Mouse   184 TKCLLTKEEMKTFHFPLPGSPNYENFILTKYTGFITDSSPLFGLDCE-VCLTSMGKEL------- 240

  Fly  1060 TIKPCHMSVARISCIRGQGPAEGVPFMDDYISTQEKVVDYLTQFSGIKPGDLDANFSKKRL---- 1120
                     .|||.:. :|   |...:|:.:....|::||||.|:||         :|:.|    
Mouse   241 ---------TRISLVT-EG---GYCLIDELVKPDLKILDYLTSFTGI---------TKEILNPVT 283

  Fly  1121 TALKYSYQKLKYLVDVGVIFVGHGLKNDFRVINIYVPSEQIIDTVHLFHMPHHRMVSLRFLAWHF 1185
            |.||...:.|:.|:....:.|||.|..|.||:.:..|  .:|||..|:.....|...|.|||...
Mouse   284 TKLKDVQKLLRELLPPDAVLVGHCLDLDLRVLKMIHP--YVIDTSLLYAGKQGRRFKLTFLARVI 346

  Fly  1186 LGTKIQSET---HDSIEDARTTLQLYKHYLKL---------------------QEEKKFANALKN 1226
            ||..||...   .|.|||||..|:|.:::||.                     :||....:.||.
Mouse   347 LGKDIQCPNKLGRDGIEDARAALELLQYFLKYGPKKIAEFNLEALAANQEQGDKEEAAHMSVLKC 411

  Fly  1227 LYERGKQL 1234
            |...|::|
Mouse   412 LESMGQKL 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PAN2NP_610427.2 WD40 63..>270 CDD:330360
WD40 repeat 148..183 CDD:293791
WD40 repeat 187..221 CDD:293791
WD40 repeat 227..273 CDD:293791
WD40 repeat 278..314 CDD:293791
UCH_1 505..940 CDD:315986 23/131 (18%)
zf-CCCH_2 799..816 CDD:317060
PAN2_exo 1036..1209 CDD:99846 55/179 (31%)
Rexo5XP_011240147.1 REX1_like 225..373 CDD:99848 55/179 (31%)
RRM_SF 490..560 CDD:388407
RRM_SF 586..656 CDD:388407
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0847
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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