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Protein Alignment PAN2 and Trex1

DIOPT Version :9

Sequence 1:	NP_610427.2	Gene:	PAN2 / 35893	FlyBaseID:	FBgn0033352	Length:	1241	Species:	Drosophila melanogaster
Sequence 2:	NP_001012236.1	Gene:	Trex1 / 22040	MGIID:	1328317	Length:	314	Species:	Mus musculus

Alignment Length:	323	Identity:	71/323 - (21%)
Similarity:	99/323 - (30%)	Gaps:	122/323 - (37%)

- Green bases have known domain annotations that are detailed below.

  Fly   384 LSSVMLPHLTTGTQWFSDW---------PE--ELLRYRYHRPKTIDPEVLSNMKM-QG-PIGYSP 435
            :.|..|||....|..|.|.         ||  ||.....||      ..|.|..: || |   .|
Mouse     1 MGSQTLPHGHMQTLIFLDLEATGLPSSRPEVTELCLLAVHR------RALENTSISQGHP---PP 56

  Fly   436 NPRTAR-RNQIPYVIEQGGVCSPNGNGTAAATKAENGVKIIPRRYRKVELKYTKLGTQDFD---- 495
            .||..| .:::...|..|..|||..:.....:|||..|:                |.|.||
Mouse    57 VPRPPRVVDKLSLCIAPGKACSPGASEITGLSKAELEVQ----------------GRQRFDDNLA 105

  Fly   496 ------FDQHNQTC-----------FAGLEATLPNSYCNAMLQILYFTDAL-RVKLLEHSCIKEF 542
                  ..:..|.|           |..|:..|......:.|...:..|:: .:|.||.
Mouse   106 ILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQ------ 164

  Fly   543 CLSCELGFLFNMLDKSTASSP---------CQASNFLRSFRTVPEAS--ALGLILTDRSSNVNLI 596
                             ||||         ...|.:.|.:...|..|  |.|.:||       |:
Mouse   165 -----------------ASSPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDVLT-------LL 205

  Fly   597 SLIQNWNRFILHQM---HYEIFDSSK----------------NASTYSGSVQTSTNAENAGSS 640
            |:.| |....|.|.   |...|.:.|                :|:|.:..:.|:..:.:.|.|
Mouse   206 SICQ-WKPQALLQWVDEHARPFSTVKPMYGTPATTGTTNLRPHAATATTPLATANGSPSNGRS 267

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.