DRSC/TRiP Functional Genomics Resources

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Protein Alignment PAN2 and Y17G7B.12

DIOPT Version :10

Sequence 1:NP_610427.2 Gene:PAN2 / 35893 FlyBaseID:FBgn0033352 Length:1241 Species:Drosophila melanogaster
Sequence 2:NP_496560.1 Gene:Y17G7B.12 / 174842 WormBaseID:WBGene00012465 Length:269 Species:Caenorhabditis elegans


Alignment Length:199 Identity:61/199 - (30%)
Similarity:93/199 - (46%) Gaps:33/199 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  1024 LQSDEMPQSGDLVAMDAEFVTLNPEENEIRPDGKTATIKPCHMSVARISCIRGQGPAEGVPFMDD 1088
            ::..|..:...::|:|.|:|....        |.|..|      :||||.:...|..    ..|.
 Worm    91 IEDSERGELTKVIAIDCEYVGAGM--------GGTTDI------LARISIVNELGKI----VYDK 137

  Fly  1089 YISTQEKVVDYLTQFSGIKPGDLDANFSKKRLTALKY--SYQKLKYLVDVGVIFVGHGLKNDFRV 1151
            ::...|||.|:.|..|||:|.::        :.|:.:  :..::..|:| |.|.:||.:.|||||
 Worm   138 FVKPTEKVTDFRTAVSGIRPENM--------IKAIPFDRAQTEVSKLID-GRIVIGHAVHNDFRV 193

  Fly  1152 INIYVPSEQIIDTVH---LFHMP-HHRMVSLRFLAWHFLGTKIQSETHDSIEDARTTLQLYKHYL 1212
            :.:....:...||..   |.:|. ||...||:.||...||.:||...||||.|||..|:||:...
 Worm   194 LKLNHIRKLTRDTAKCTILKNMANHHGTPSLKKLAKEVLGIEIQRGEHDSITDARVALRLYEAVK 258

  Fly  1213 KLQE 1216
            |..|
 Worm   259 KQWE 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PAN2NP_610427.2 WD40 63..>270 CDD:475233
WD40 repeat 148..183 CDD:293791
WD40 repeat 187..221 CDD:293791
WD40 repeat 227..273 CDD:293791
WD40 repeat 278..314 CDD:293791
UCH_1 505..940 CDD:463872
zf-CCCH_2 799..816 CDD:464217
PAN2_exo 1036..1209 CDD:99846 57/178 (32%)
Y17G7B.12NP_496560.1 REX4_like 103..254 CDD:99847 56/177 (32%)
Blue background indicates that the domain is not in the aligned region.

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