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Protein Alignment PAN2 and Trex1

DIOPT Version :10

Sequence 1:	NP_610427.2	Gene:	PAN2 / 35893	FlyBaseID:	FBgn0033352	Length:	1241	Species:	Drosophila melanogaster
Sequence 2:	NP_001020160.1	Gene:	Trex1 / 100049583	RGDID:	1311998	Length:	316	Species:	Rattus norvegicus

Alignment Length:	319	Identity:	61/319 - (19%)
Similarity:	96/319 - (30%)	Gaps:	128/319 - (40%)

- Green bases have known domain annotations that are detailed below.

  Fly   815 HPDRKSPSHTSQPNAVNNSPNGRQKSWFPLTFTMGINDQGEVQVQTQSDASSGKSEQEEETEKPP 879
            |....|.....||..|...|.              :.|:..:.:......|||.||....|
  Rat    42 HALENSSMSEGQPPPVPKPPR--------------VVDKLSLCIAPGKPCSSGASEITGLT---- 88

  Fly   880 TKGLDNNRMYALHAVVCQVDDGTQK---NLVSLINV---QRPYHTMKLAESADDPQSQWYIFNDF 938
            |.||:.:              |.|:   ||.:|:.|   ::|.....:|.:.|.        .||
  Rat    89 TAGLEAH--------------GRQRFNDNLATLLQVFLQRQPQPCCLVAHNGDR--------YDF 131

  Fly   939 --------SISPVSPQESVWFTLDWKVPCILFYRHVEDDSESASTTSSTVTESEETIPSESSSGS 995
                    |:|.:||.:..:        |:        ||.:|..|....:...|..|.:|.|
  Rat   132 PLLQAELASLSVISPLDGTF--------CV--------DSIAALKTLEQASSPSEHGPRKSYS-- 178

  Fly   996 PTNLSNPFLEEIVSPMLGNLSADATLQPLQSDEMPQSGDLVAMDAEFVTLNPE------ENEIRP 1054
                    |..|.:.:.|.         ..:|.....||::|: .......|:      :...||
  Rat   179 --------LGSIYTRLYGQ---------APTDSHTAEGDVLAL-LSICQWKPQALLQWVDKHARP 225

  Fly  1055 DGKTATIKPCH---------------------MSVARISCIRGQG--------PAEGVP 1084
               .:||||.:                     ::.|.:|...|:.        |.|.||
  Rat   226 ---FSTIKPMYGMAATTGTASPRLCAATTSSPLATANLSPSNGRSRGKRPTSPPPENVP 281

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.