DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8243 and arfgap2

DIOPT Version :9

Sequence 1:NP_610424.1 Gene:CG8243 / 35890 FlyBaseID:FBgn0033349 Length:517 Species:Drosophila melanogaster
Sequence 2:XP_005159305.1 Gene:arfgap2 / 641490 ZFINID:ZDB-GENE-051120-177 Length:551 Species:Danio rerio


Alignment Length:582 Identity:125/582 - (21%)
Similarity:217/582 - (37%) Gaps:134/582 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 TLLTQMLRDEDNKYCVDCDAKGPRWASWNLGMFLCIRCAGIHRNLGVHISRVKSVNLDT-WTPEQ 82
            |:..::.....||.|.||.||.|.|||.:.|:||||.|:||||:||||:|.::|..||: |...|
Zfish    12 TIFKRLRSIPTNKACFDCAAKNPSWASISYGVFLCIDCSGIHRSLGVHLSFIRSTELDSNWNWFQ 76

  Fly    83 VISLQQMGNSRARAVYEAQLPDGFRRPQTDTALENFIRAKYEHK------------------KYL 129
            :..:|..||:.|.         ||.|....|.  |...|||..:                  ||.
Zfish    77 LRCMQVGGNANAM---------GFFRQHGCTT--NDTNAKYNSRAAQMYREKIRQLANAALSKYG 130

  Fly   130 AREWV------PPSPPKVDWAKEIDEELERQKRKKKSTQAQATLGLA--GVAGGSGDKRLSGSSA 186
            ...|:      .|||.:.......||.          ||...:..:|  .:...:|.:.::...|
Zfish   131 TDLWIDSSSCAQPSPVEKRETDFFDEH----------TQPAISWDMASPSLTDQNGAENVNPQLA 185

  Fly   187 -SALKNTPLPAPLPKPKPNQVG-GCSPKTT--QRVQLNSSGVSSAGE--SDLLGLSSPTKPIVAT 245
             |..||:..|...|:..|:..| ..|||.|  ..::|.|....|..:  ..::|...|.......
Zfish   186 QSNPKNSETPNTQPEEGPSIEGLSTSPKATIEDSMRLTSEEPQSPKDVKPSIIGKKKPVAAKKGL 250

  Fly   246 NASQDLQNESFTSFLSAESIAGQPDKPIGSNGDAANLMGSKPNSLAQEEQDFFNQGSLGAGGNEK 310
            .|.:.         |.|:.::.:....:......|..|..:..:.|:::.|.....|:.....|.
Zfish   251 GAKKG---------LGAQKVSSKSFSEVEKQAQVAEKMREEQAAEAKKQADESIVASMRLAYKEL 306

  Fly   311 DQSGKMSKDSILALYG-SAPATHNPQMNFGGFTGMAPGGYMHQQQ--QQQIPHQFMTPPNS-VSM 371
            :...||.:..:..|.| .........|.||..:.:: ...|.:.|  :|:.|....:...| :.|
Zfish   307 EIDRKMEEKKMQNLEGKKKEQAERLGMGFGNRSAVS-HSVMAEMQVIEQETPVGVKSSSRSKLDM 370

  Fly   372 YNSPVMAA-PNAFSNAAISSATAMSMGGSHGFTGAQFPSTGGSPYAA---------AGQAAATNL 426
            :..|..|: |..:.:...:|..:.         |:::.:.|||.:::         ..:...:::
Zfish   371 FEEPGFASGPPKYKDNPFTSGDSF---------GSRWDNDGGSSFSSWALEKEEPKDSEVTISSI 426

  Fly   427 MQTNQSILSGMPLFGAVPQQQQQHQQQ-------------LQQQHHPQ------LGGLSMNL--- 469
            ....:.:.|......:||..:....:|             ..::.:|:      |.|:|.:.   
Zfish   427 QPIGERLPSRRKPEVSVPVSESSEARQKFANAKAISSDMFFGRESNPEYEAKTRLEGMSGSTSIS 491

  Fly   470 ---------MQP---------LPSGLNIGQPPQG----AGGFAATGPTTSSVPSNLNQQFGN 509
                     ::|         ||||.:|.|..||    ||..|.   ..:.|.:.:..::|:
Zfish   492 SADLFGDGSVRPSGSTGFDSVLPSGPDIAQFKQGVKTVAGKMAV---LANGVMNTIQDRYGS 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8243NP_610424.1 ArfGap 18..132 CDD:279720 46/131 (35%)
COG5347 20..300 CDD:227651 79/312 (25%)
arfgap2XP_005159305.1 PLN03114 1..498 CDD:178661 111/525 (21%)
ArfGap 13..117 CDD:279720 43/114 (38%)
TMF_DNA_bd 270..331 CDD:289127 10/60 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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