DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8243 and ArfGAP1

DIOPT Version :9

Sequence 1:NP_610424.1 Gene:CG8243 / 35890 FlyBaseID:FBgn0033349 Length:517 Species:Drosophila melanogaster
Sequence 2:NP_524040.2 Gene:ArfGAP1 / 39417 FlyBaseID:FBgn0020655 Length:468 Species:Drosophila melanogaster


Alignment Length:505 Identity:112/505 - (22%)
Similarity:176/505 - (34%) Gaps:146/505 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 AGQRTKLIQEKCQTLLTQMLRDEDNKYCVDCDAKGPRWASWNLGMFLCIRCAGIHRNLGVHISRV 70
            |..||:.:       |.::...::|..|.:|....|:|.|...|:::|:.|:|.||:||||:|.|
  Fly     2 ASPRTRRV-------LQELKPQDENSKCFECGTHNPQWVSVTYGIWICLECSGKHRSLGVHLSFV 59

  Fly    71 KSVNLDTWTPEQVISLQQMGNSRARAVYEAQLPDGFRRPQTDTALENFIRAKYEHK-KYLAREWV 134
            :||.:|.|...::..::..||..||...|.|.....|.|         |..:|..| ..|.|:.:
  Fly    60 RSVTMDKWKDIELEKMKAGGNRNAREFLEDQEDWNERAP---------ITQRYNSKAAALYRDKI 115

  Fly   135 PPSPPKVDWAKEIDEELERQKR------------KKKSTQAQATL----GLAGVAGGSG------ 177
            ........|     :..|.|.|            ...|.|::.:.    |..|...|.|      
  Fly   116 ATLAQGKSW-----DLKEAQGRVGSNNSFSSGGSSNSSYQSRPSATGYGGNGGYQNGGGAEPGGY 175

  Fly   178 ---------DKRLSGSSASALKNTPLPAPLPKPKPNQVGGCS-----PKTTQRVQLNSSGVSSAG 228
                     |::....|...::|...|..||..:..:..|..     |..||..:|..|.:|:..
  Fly   176 QQYQTQEFKDQKEEFFSRRQVENASRPENLPPSQGGKYAGFGFTREPPPKTQSQELFDSTLSTLA 240

  Fly   229 ESDLLGLSSPTKPIVATNASQDLQNESFTSFLSAESIAGQPDK--------------------PI 273
            .    |.|     :.:||||: |.:.:....::..::|....|                    .:
  Fly   241 S----GWS-----LFSTNASK-LASTAKEKAVTTVNLASTKIKEGTLLDSVQCGVTDVASKVTDM 295

  Fly   274 GSNGDAANLMGSKPNSLAQEEQDFFN----------QGSLGAGGNEKDQSGKMS--KDSILALYG 326
            |..| ..||.||..:|    .|..:|          |.|...|||.....|:.|  .||      
  Fly   296 GKRG-WNNLAGSNISS----PQGGYNDPNFEDSSAYQRSNSVGGNLAGGLGQQSGVSDS------ 349

  Fly   327 SAPATHNPQMNFGGFTGMAPGGYMHQQQQQQIPHQFMTPPNSVSMYNSPVMAAPNAFSNAAISSA 391
                      ::||:          |.......|  ||   |.|.|::.:.::    |....:||
  Fly   350 ----------DWGGW----------QDNGNSKSH--MT---SSSSYHNQLSSS----SGGGTASA 385

  Fly   392 TAMSMGGSHGFTGAQFPSTGGSPYAAAGQAAAT-----NLMQTNQSILSG 436
            .........||....:.|:..| |..|....:|     .|..|:|.:..|
  Fly   386 GLTRDADWSGFEATNYQSSETS-YQNASSGGSTARRNMKLQDTSQKLSEG 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8243NP_610424.1 ArfGap 18..132 CDD:279720 35/114 (31%)
COG5347 20..300 CDD:227651 77/346 (22%)
ArfGAP1NP_524040.2 ArfGap 7..114 CDD:279720 36/122 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464127
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.