DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8243 and agfg1a

DIOPT Version :9

Sequence 1:NP_610424.1 Gene:CG8243 / 35890 FlyBaseID:FBgn0033349 Length:517 Species:Drosophila melanogaster
Sequence 2:XP_021337018.1 Gene:agfg1a / 327597 ZFINID:ZDB-GENE-030131-5808 Length:596 Species:Danio rerio


Alignment Length:587 Identity:142/587 - (24%)
Similarity:214/587 - (36%) Gaps:173/587 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 QEKCQTLLTQMLRDEDNKYCVDCDAKGPRWASWNLGMFLCIRCAGIHRNLG-VHISRVKSVNLDT 77
            :||...:|.:|.....|:.|.|||.:||.:|:..:|.|:|..|:||.|.|. .|  ||||:::.|
Zfish    10 EEKHLKMLREMTSLAPNRKCFDCDQRGPTYANMTVGSFVCTSCSGILRGLNPPH--RVKSISMTT 72

  Fly    78 WTPEQVISLQQMGNSRARAVY-------EAQLPDGFRRPQTDTALENFIRAKYEHKKYLAREWVP 135
            :|.:::..||:.||...:.::       ...:|| ||.||   .::.|::.|||.|::    :||
Zfish    73 FTQQEIELLQKHGNEVCKQIWLGLYDDRNLAIPD-FREPQ---KVKEFLQDKYEKKRW----YVP 129

  Fly   136 PSPPKVDWAKEIDEELERQKRKKKSTQAQATLGLAGVAGGSGDKRLSGSSASALKNTPLPAPLP- 199
            |...|.                           :|.|...     :||||||:..:||...||. 
Zfish   130 PEQAKT---------------------------VASVHAS-----ISGSSASSTSSTPEVRPLKT 162

  Fly   200 ------------KPKPNQVGGCSPKTTQRVQLNSSGVSSAGESDLLGLSSPTKPIVATNASQDLQ 252
                        |..|:|    || ...|.||........ :.||  ||.....|.|...||...
Zfish   163 LLGESVPSLHLNKNTPSQ----SP-VVSRAQLAHQQYQDR-KFDL--LSDLGGDIFAPPHSQSTG 219

  Fly   253 NESFTSFLSAESIAGQPDKPIGSNGDAANL-------------MGSKPNSLAQEEQDFFNQGSLG 304
            |.:|.:|....|.:.|   .:.::.|.||.             ..|.|.:..|..|..:|  ||.
Zfish   220 NANFANFAHFNSHSAQ---SVNASADFANFDTFKSSAAPTTAAFPSAPQAPFQPPQPVYN--SLP 279

  Fly   305 AGGNEKDQSGKMSKDSILALYGSAPATHNPQMNFGGFTGMAPGGYMHQQQQQQIPHQFMTPPNSV 369
            ...:..:.:..:..   ||::.|:....|  .||..|..      .|:......|....:..|||
Zfish   280 FSRSVGEFTSLLPP---LAMHSSSSGLSN--ANFANFDN------FHKSCSADFPSFSSSQSNSV 333

  Fly   370 -SMYNSPVMAAP-----------NAFSNAAISSATAMSMGGSHGFTGAQFPSTGGSPYAA----- 417
             .::.:..::.|           |.||:......::.......|....|....||..|||     
Zfish   334 GDVHKADAVSVPADRYAALADLDNIFSSKPEQGPSSAPPSAGVGPPPPQAALLGGDRYAAFAELD 398

  Fly   418 ----------AGQAAATNLMQTNQSILSGMPLFGAVP-QQQQQHQQQLQQQHH------------ 459
                      :|..|||    |.|..:.|..  .||| .|.||....:.|...            
Zfish   399 NVFGPSVPNVSGYQAAT----TAQGAVYGTS--SAVPTAQAQQGLPNIPQGFAGPSTNPFVAPGA 457

  Fly   460 -----------------PQLGGLSMNLMQPLPSGLNIGQPPQGAGGFAATGPTTSSVPSNLNQQF 507
                             |.:|..:.:::.|||..   ..|   |..||:.||.:.|:|:.    |
Zfish   458 PQAPPTNPFQANGRAAVPGMGVAAADMLGPLPGH---SYP---AAHFASFGPPSMSMPTG----F 512

  Fly   508 GN 509
            ||
Zfish   513 GN 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8243NP_610424.1 ArfGap 18..132 CDD:279720 40/121 (33%)
COG5347 20..300 CDD:227651 84/313 (27%)
agfg1aXP_021337018.1 ArfGap 17..134 CDD:214518 43/126 (34%)
DNA_pol3_gamma3 <365..594 CDD:331207 37/166 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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