DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8243 and Acap3

DIOPT Version :9

Sequence 1:NP_610424.1 Gene:CG8243 / 35890 FlyBaseID:FBgn0033349 Length:517 Species:Drosophila melanogaster
Sequence 2:NP_001382677.1 Gene:Acap3 / 313772 RGDID:1310711 Length:833 Species:Rattus norvegicus


Alignment Length:557 Identity:124/557 - (22%)
Similarity:198/557 - (35%) Gaps:187/557 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 KCQTLLTQMLRDEDNKYCVDCDAKGPRWASWNLGMFLCIRCAGIHRNLGVHISRVKSVNLDTWTP 80
            |.:::|.::.....|..|.||....|||||.|||:.|||.|:||||:||||.|:|:|:.||:|.|
  Rat   401 KGESVLQRVQSVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLTLDSWEP 465

  Fly    81 EQVISLQQMGNSRARAVYEAQLP-DGFRRPQTDTA---LENFIRAKYEHKKYLAREWVPP--SPP 139
            |.:..:.::||:....:||||.. .|.|:|...::   .|.:|:.||..||:|.:....|  .||
  Rat   466 ELLKLMCELGNNTMNQIYEAQCEGPGIRKPTASSSRQDKEAWIKDKYVEKKFLRKLTSAPVREPP 530

  Fly   140 KVDWAKEIDEELERQKRKKKSTQAQATLGLAGVAGGSGDKRLSGSSASALKNTPLPAPLPKPKPN 204
                         |:.|.:|..:                                    |...|:
  Rat   531 -------------RRWRAQKCQR------------------------------------PHSSPH 546

  Fly   205 QVGGCSPKTTQRVQLNSSGVSSAGESDLLGLSSPTKPIVATNASQDLQNESFT------------ 257
                 :|.|.::|:|                 .|..|.||..:|.......|.            
  Rat   547 -----APTTRRKVRL-----------------EPVLPSVAALSSAGTMERKFRRDSLFCPDELDS 589

  Fly   258 --SFLSAESIAGQP-----DKPIGSNGDAANLM-----GSKPNSLAQEEQDFFNQGSLGAGGNEK 310
              |:..|.:....|     |..:|.:.|.::.:     ||..:|:.:||                
  Rat   590 LFSYFDAGAAGAGPRSLSSDSGLGGSSDGSSDVLAFGTGSVVDSVTEEE---------------- 638

  Fly   311 DQSGKMSKDSILALYGSAPATHNPQMNFGGFTGMAPGGYMHQQQQQQIPHQFMTPPNSVSMYNSP 375
               |..|::|...:.|.|.|     .:......:.||...||..:.:               :.|
  Rat   639 ---GAESEESSSEVDGEAEA-----WSLADVRELHPGLLAHQAARTR---------------DLP 680

  Fly   376 VMAAPNA------FSNAAISSATAM---SMGGS---------HGFTGAQFPSTGGSPYAAAGQAA 422
            .:||..|      :::.|....|.:   .:|||         :|....|..|.|.:|.     ..
  Rat   681 ALAAALAHGAEVNWADTADEGKTPLVQAVLGGSLIVCEFLLQNGADVNQRDSLGRAPL-----HH 740

  Fly   423 ATNLMQTNQSILSGMPLFGAVPQQQQQHQQQLQQQHHPQLGGLSMNL-------MQPLPSGLNIG 480
            ||.|.:|.|..|       .:.:...||....:||....:...:.|.       :..:...:...
  Rat   741 ATLLGRTGQVCL-------FLKRGADQHALDQEQQDPLTIAVQAANADIVTLLRLARMAEEMREA 798

  Fly   481 QPPQGAGGFAATGPTTSSVPSNLN-----QQFGNLNI 512
            :.|.|     ..||...|.|:.|.     |:|..|::
  Rat   799 EAPPG-----QPGPLPGSSPTELQYRRCIQEFIGLHL 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8243NP_610424.1 ArfGap 18..132 CDD:279720 49/117 (42%)
COG5347 20..300 CDD:227651 78/309 (25%)
Acap3NP_001382677.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.