DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgi and PGI1

DIOPT Version :9

Sequence 1:NP_523663.1 Gene:Pgi / 35886 FlyBaseID:FBgn0003074 Length:558 Species:Drosophila melanogaster
Sequence 2:NP_194193.2 Gene:PGI1 / 828564 AraportID:AT4G24620 Length:613 Species:Arabidopsis thaliana


Alignment Length:570 Identity:160/570 - (28%)
Similarity:243/570 - (42%) Gaps:97/570 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PLNQEAAFQKLQE--YYDSKGKDLNIKDLFVKDSKRFSKYSLRLHTQNDGEILLDYSKNRINDEV 69
            ||...:|....::  :.|||      |:|.......:.:|....:.|.:..:.||.|:....||.
plant    45 PLTLSSARSVARDISHADSK------KELLKDPDALWKRYLDWFYQQKELGLYLDISRVGFTDEF 103

  Fly    70 WDLLLTLAKVR-RVNAARDAM---FSGQHINITENRAVLHTALRNRGTDP-----VLVDDKDVMP 125
                  :|::. |..||..||   ..|...|..|.|.|.|..|||....|     .|:::     
plant   104 ------VAEMEPRFQAAFKAMEDLEKGSIANPDEGRMVGHYWLRNSKLAPKPTLKTLIEN----- 157

  Fly   126 DVRAELAHMKEFTNMVISGVWRGCTGKQ--ITDVVNIGIGGSDLGPLMVTEALKPYGKGLHSHFV 188
                .|..:..|::.:|||..:..:..:  .|.::::|||||.|||..|.|||.|....|...|:
plant   158 ----TLDSICAFSDDIISGKIKPPSSPEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFI 218

  Fly   189 SNIDGTHLAEVLKKVNYE--TTLFIVASKTFTTQETITNATSAKTWLLEHSKEPE----SVAKHF 247
            .|.|...:...:.::..|  :||.:|.||:..|.||       :..|||..|...    :.||..
plant   219 DNTDPAGIDHQIAQLGPELASTLVVVISKSGGTPET-------RNGLLEVQKAFREAGLNFAKQG 276

  Fly   248 VALSTNKEKVTEFGIDST-------NMFGFWDWVGGRYSLWSAIGLSICLSIGFENFEQLLDGAH 305
            ||::.....     :|:|       ..|..:||||||.|:.||:||......|. |..::|.||.
plant   277 VAITQENSL-----LDNTARIEGWLARFPMYDWVGGRTSIMSAVGLLPAALQGI-NVREMLTGAA 335

  Fly   306 FMDNHFKTTPFEKNAPVILALLGVWYSNFFKAETHALLPYDQYLHRFAAYFQQGDMESNGKFVSK 370
            .||...:||..:.|...:||:...|.||...::...:|||...|..|:.|.||..|||.||....
plant   336 LMDEATRTTSIKNNPAALLAMCWYWASNGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKEFDL 400

  Fly   371 SGKPVKYSTGPIVWGEPGTNGQHAFYQLIHQGTRLIPCDFIAPAQTHNPIAGGKHHKILLSNFLA 435
            .|..|  :.|..|:|..|:..|||:.|.:..|.......||...:...|     .|.        
plant   401 DGNTV--NQGLTVYGNKGSTDQHAYIQQLRDGVHNFFATFIEVLRDRPP-----GHD-------- 450

  Fly   436 QTEALMAGKTVDEARTELSKAGLCGNELDNLLP---HKVFVGNRPTNSIVVKKVSPFTLGALIAL 497
                           .||.....||:.|..:|.   ..::...|.:.|:.:::|:|.::||:|||
plant   451 ---------------WELEPGVTCGDYLFGMLQGTRSALYANGRESISVTIQEVTPTSVGAIIAL 500

  Fly   498 YEHKIFVQGIIWDINSFDQWGVELGKQLAKAI----EPELDHCNEVSTHD 543
            ||..:.:...|.:||::.|.|||.||:.|..:    :..|...||.:..|
plant   501 YERAVGLYASIVNINAYHQPGVEAGKKAAAEVLALQKRVLSVLNEATCKD 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PgiNP_523663.1 pgi 7..556 CDD:234679 160/570 (28%)
SIS_PGI_1 128..290 CDD:240146 54/176 (31%)
SIS_PGI_2 338..529 CDD:240147 55/193 (28%)
PGI1NP_194193.2 pgi 70..604 CDD:237609 152/539 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0166
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D446616at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100716
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.680

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