DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30349 and Wdr43

DIOPT Version :10

Sequence 1:NP_610421.1 Gene:CG30349 / 35885 FlyBaseID:FBgn0050349 Length:620 Species:Drosophila melanogaster
Sequence 2:NP_001032880.2 Gene:Wdr43 / 362703 RGDID:1565005 Length:674 Species:Rattus norvegicus


Alignment Length:681 Identity:181/681 - (26%)
Similarity:306/681 - (44%) Gaps:112/681 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FSPNGGQLFASVDESGVLRIWNTETNTLYQEFTPNLQLSGSCTALTW----VLVAGSRPKKSRKS 71
            |||:....||.....|.||:|.|..|.|:||:.|:..|||:||.|.|    :....|..:|.|||
  Rat    21 FSPDSQAYFALASSDGHLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKESHQRKKRKS 85

  Fly    72 LQAQDAAG--DQLH-IALGTYKGSVVIYSLAEGKISRTLSGDSHDGPVTSIT--NDNAGHLYTVG 131
                :|.|  ||.. :||||..||:::||..:|::...|....|:..|..|.  .||        
  Rat    86 ----EAIGTNDQADLLALGTAVGSILLYSTVKGELHSKLISGGHEKRVNCIQWHQDN-------- 138

  Fly   132 ADCRVVVWSLTDERSIAEWQV----------GPEKPQNIVYLQKSGTLAIGY-RQLKVYDIKTKE 185
             ||   ::|.:|::.|.||..          |.....:.:.:...|.:.:.. |.:|::.::|||
  Rat   139 -DC---LYSCSDDKYIVEWSTQMCRVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWVLETKE 199

  Fly   186 LVETFTGHSGEINTISSVAST----------DGTE--FVLTTAKMERVICFWKIDKKGKNKAS-- 236
            :...||||:   ..:||:..|          ||..  :.|:.|..:|::..|::..:.|.|::  
  Rat   200 VYRHFTGHA---TPVSSLRFTTIRPNESQPFDGVTGLYFLSGAVHDRLLNVWQVRSENKEKSAVM 261

  Fly   237 ACTLLMEDLAYCLTSEVRDDGQLRVASVTRNGIIHIY--LLNVNSLSAEKFVKPKVSLQIVSDG- 298
            :.|:..|.:...||.....:..:::|.|.|:|.:|::  :||.:   .:|.:....::|:.:.| 
  Rat   262 SFTVTDEPVYIDLTLSENKEEPVKLAVVCRDGQVHLFEHVLNGH---CKKPLTSNCTIQVATPGK 323

  Fly   299 --AETVEPLLAVAAHFVTDSNRSHEILFGYGSRQQLQFERFTPNYGEKLNVIVRADPKKLYAKKK 361
              ..|.:|:..:||.|..|   ...:|..|||..|...||...| .:..::.:..|....:|   
  Rat   324 GKKATPKPIPILAAGFCLD---KMSLLLVYGSWFQPTIERLALN-SKDTHICLERDISNCWA--- 381

  Fly   362 GKEQPGYQAA-TKVQKPIVNQK------NVEYNSA----LPISQKKVQN-------EVPMEARLE 408
                |..:.| |||:.|::|.:      .|..:.|    ||...|:.:|       |..:|.||.
  Rat   382 ----PTVETAITKVKTPVMNSEAKVLVPGVPGHHAPIKLLPAQPKEAENKRKLGGKEATIEERLG 442

  Fly   409 HLKIQGTKLSGGKLLTQSKTQLLMQALHSKDQAMIQAVLSTQDPETIQLTLDRLPLDYVNPLVNE 473
            .:.:.........|.|.|...||.|.|.|.|..|:..||.|::...|:.|:.|:||..|.||:.|
  Rat   443 AMDLDRRGKKDDLLQTNSFPVLLAQGLESNDFEMLNKVLQTRNVNLIKKTVLRMPLHAVIPLLQE 507

  Fly   474 LSILLQGKHASVRSALRWLHALTSTHTSVLMSEDKEALREKLAVCLGVAEQRMHCLSEALQITGR 538
            |:..|||...|....::||..:.:.|.|.|.:  ...|..:|.....:.|.|:....:...:.|:
  Rat   508 LTKRLQGHPNSAVLMVQWLKCVLTIHASYLST--LPDLVHQLGTLYQLMESRVKTFQKLSHLHGK 570

  Fly   539 VNLIINQMKRNADNHLNDN---KA-LILDEDPDE-------PDPEAETNWSDLEEDQPGSPKSPL 592
            :.|::.|:..:.......:   || |:.:|:..|       |:.:::.||.:.||      |...
  Rat   571 LILLVTQVTASEKTKKMPSPGLKAKLVYEEESSEEESDDEIPEKDSDDNWDEDEE------KDSE 629

  Fly   593 EDELVADD---DLATDDGNADADTDSDVSMD 620
            .||.|.:|   |.|.|:.:.|.:..|:..::
  Rat   630 NDEAVDEDSENDEAVDEEDEDREAASEKELN 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30349NP_610421.1 WD40 repeat 7..50 CDD:293791 16/38 (42%)
WD40 <11..228 CDD:441893 73/248 (29%)
WD40 repeat 72..108 CDD:293791 13/38 (34%)
WD40 repeat 117..151 CDD:293791 9/35 (26%)
WD40 repeat 159..191 CDD:293791 6/32 (19%)
WD40 repeat 200..241 CDD:293791 12/54 (22%)
WD40 repeat 248..273 CDD:293791 7/24 (29%)
Utp12 439..544 CDD:461125 30/104 (29%)
Wdr43NP_001032880.2 WD40 repeat 19..57 CDD:293791 15/35 (43%)
WD40 <20..305 CDD:441893 86/302 (28%)
WD40 repeat 63..124 CDD:293791 22/64 (34%)
WD40 repeat 129..165 CDD:293791 11/47 (23%)
WD40 repeat 172..205 CDD:293791 6/32 (19%)
WD40 repeat 211..261 CDD:293791 11/49 (22%)
WD40 repeat 270..317 CDD:293791 10/49 (20%)
Utp12 472..574 CDD:461125 29/103 (28%)

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