DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT8 and cct4

DIOPT Version :9

Sequence 1:NP_610418.1 Gene:CCT8 / 35882 FlyBaseID:FBgn0284436 Length:546 Species:Drosophila melanogaster
Sequence 2:NP_956877.1 Gene:cct4 / 393555 ZFINID:ZDB-GENE-040426-1421 Length:533 Species:Danio rerio


Alignment Length:550 Identity:159/550 - (28%)
Similarity:276/550 - (50%) Gaps:48/550 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VPKAPGVSQMLKDGARMYSGLEEAV---FRNISACKEFAQTMRSAYGPNGMNKMIINHIEKQFVT 66
            :|:|...:..:|:....|...::..   :.||:|.|..|..:|::.||.||:|||.:......:|
Zfish     1 MPEAVVAASGIKNKGSAYVDRDKPAQIRYSNINAGKAVADAIRTSLGPKGMDKMIQDGKGDVTIT 65

  Fly    67 SDAGTIMRELDVEHPAAKLIVMASQMQDAEVGDGTNFVVVLAGALLESAEELLRLGITTAEISDG 131
            :|..||::::.|.|||||::|..|:.||.|.||||..|||:|||||::..:||:.||....||:.
Zfish    66 NDGATILKQMQVLHPAAKMMVELSKAQDIEAGDGTTSVVVIAGALLDACAKLLQKGIHPTIISES 130

  Fly   132 YEKALEKALEIL-----PNLVSHKIEDYRNVEKVKEVLRTSIMSKQYGQEDFLNDLVSKACVSIL 191
            ::||::|.:|:|     |.|:|.:       |.:.....||:.||...|...|...:|...|..:
Zfish   131 FQKAVDKGVEVLTSISTPLLLSDR-------ESLLNSASTSLCSKVVSQNSSLLAPMSVDAVMKV 188

  Fly   192 PDEGT-FNVD--NIRICKILGSGLTKSEVVRGMVF-KRFVEGDVTYAEKAKIVIFSCPVDIIQTE 252
            .|..| .:||  :|.:.|.||..:...|:|.|||. :|.....|:..|||||.:....:...:|:
Zfish   189 IDPATATSVDLRDINVVKKLGGTIDDCELVDGMVLTQRVASTGVSRVEKAKIGLIQFCLSPPKTD 253

  Fly   253 TKGTVLIKSADELLSFSSGEESLLESQIKAIADAGVKVV-----VAGGKVGDMALHFLNKYGLMA 312
            ....:::....::......|.:.:.:.:|.:..||..|:     :....:.|:|||||||..:|.
Zfish   254 MDNQIVVSDYAQMDRVLREERAYILNLVKQVKKAGCTVLLIQKSILRDALSDLALHFLNKMKIMV 318

  Fly   313 VRLNSKFDLRRLSRSVNATVLPRITTPSQEELGYCDKVCIEEL---GDTTIVAFRNEGKDSRIAT 374
            ::...:.::..:.:::....:..|...:.|.||..:  .:||:   |...:|.........:..:
Zfish   319 IKDIEREEIEFICKTIGTKPIAHIDQFTPEMLGSAE--LVEEVSLDGSGKLVKITGCASPGKTVS 381

  Fly   375 VVIRGATDNFMDDIERALDDAINNFKCLTRDGRYLPGAGATEIELATQLSAYADTLPGLDQYAVR 439
            :|:||:....:::.||::.||:...:||.:....:.|.||.|||||.:|:.||.:|.|::.|.||
Zfish   382 IVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLAEYARSLGGMEAYCVR 446

  Fly   440 KFANALEVFPKALAENSGINGTEIVNQLYLAHNNEAGKTIGFDIEAEKASTIDTTKAKLFDLYQS 504
            .:|:||||.|..||||:|:|....|.:|...|           .:.|..:.|:..|..:.::.:.
Zfish   447 AYADALEVIPSTLAENAGLNPISTVTELRNRH-----------AQGETTAGINVRKGGISNILEE 500

  Fly   505 --------KFWGLKYAVGAAATILKVDQII 526
                    ....|..|.....:|||:|.::
Zfish   501 LVVQPLLVSISALTLATETVRSILKIDDLV 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT8NP_610418.1 TCP1_theta 20..529 CDD:239457 156/534 (29%)
Cpn60_TCP1 40..529 CDD:278544 151/511 (30%)
cct4NP_956877.1 TCP1_delta 20..532 CDD:239454 155/530 (29%)
Cpn60_TCP1 38..533 CDD:278544 151/512 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D207515at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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