DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT8 and Cct6a

DIOPT Version :9

Sequence 1:NP_610418.1 Gene:CCT8 / 35882 FlyBaseID:FBgn0284436 Length:546 Species:Drosophila melanogaster
Sequence 2:NP_001028856.1 Gene:Cct6a / 288620 RGDID:1304763 Length:531 Species:Rattus norvegicus


Alignment Length:527 Identity:143/527 - (27%)
Similarity:249/527 - (47%) Gaps:38/527 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 EEAVFRNISACKEFAQTMRSAYGPNGMNKMIINHIEKQFVTSDAGTIMRELDVEHPAAKLIVMAS 90
            :.|:..||||.:.....:|:..||.|..||:::......:|.|...::.|:.::||.|.||...:
  Rat    17 QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVA 81

  Fly    91 QMQDAEVGDGTNFVVVLAGALLESAEELLRLGITTAEISDGYEKALEKALEILPNLVSHKIEDYR 155
            ..||...||||...|::.|.||:.|:..:..|:....|::|:|.|.||||:.|..:   |:....
  Rat    82 TAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQV---KVSKEM 143

  Fly   156 NVEKVKEVLRTSIMSKQYGQ-EDFLNDLVSKACVSILPDEGTFNVDNIRICKILGSGLTKSEVVR 219
            :.|.:.:|.|||:.:|.:.: .|.|.:.|..:.::|...:...::..:.|.::.....|.:.::|
  Rat   144 DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIRKKDEPIDLFMVEIMEMKHKSETDTSLIR 208

  Fly   220 GMVF----------KRFVEGDVTYAEKAKIVIFSCPVDIIQTETKGTVLIKSADELLSFSSGEES 274
            |:|.          ||        .|.|.|:..:..::..:||.......|||:|.......|..
  Rat   209 GLVLDHGARHPDMKKR--------VENAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERK 265

  Fly   275 LLESQIKAIADAGVKV--------VVAGGK-VGDMALHFLNKYGLMAVRLNSKFDLRRLSRSVNA 330
            .:|.::|.|.:...||        ||...| :...:|..|.|.|::|:|...:.::.||:.:...
  Rat   266 FIEDRVKKIVELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGG 330

  Fly   331 TVLPRITTPSQEELGYCDKVCIEELGDTTIVAFRNEGKDSRIATVVIRGATDNFMDDIERALDDA 395
            ..|......:.:.||:...|....||:... .|..:..:.|..|::::|...:.:..|:.|:.|.
  Rat   331 IALNSFDDLNPDCLGHAGLVYEYTLGEEKF-TFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDG 394

  Fly   396 INNFKCLTRDGRYLPGAGATEIELATQLSAYADTLPGLDQYAVRKFANALEVFPKALAENSGING 460
            :...|....||..:|||||.|:.||..|..|..::.|..|..|:.||:||.:.||.||:|||.:.
  Rat   395 LRAVKNAIDDGCVVPGAGAVEVALAEALIKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDL 459

  Fly   461 TEIVNQLYLAHNNEAGKTIGFDIEAEKASTIDTTKAKLFDLYQSKFWGLKYAVGAAATILKVDQI 525
            .|.:.::...| :|:|:.:|.|:..  ...:...:..::|.|..|...|......|..||.||:|
  Rat   460 QETLVKVQAEH-SESGQLVGVDLNT--GEPMVAAEMGVWDNYCVKKQLLHSCTVIATNILLVDEI 521

  Fly   526 IMAKRAG 532
            :   |||
  Rat   522 M---RAG 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT8NP_610418.1 TCP1_theta 20..529 CDD:239457 140/522 (27%)
Cpn60_TCP1 40..529 CDD:278544 135/508 (27%)
Cct6aNP_001028856.1 chap_CCT_zeta 3..530 CDD:274088 143/527 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D207515at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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