DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT8 and cct-6

DIOPT Version :9

Sequence 1:NP_610418.1 Gene:CCT8 / 35882 FlyBaseID:FBgn0284436 Length:546 Species:Drosophila melanogaster
Sequence 2:NP_741153.1 Gene:cct-6 / 175819 WormBaseID:WBGene00000381 Length:539 Species:Caenorhabditis elegans


Alignment Length:555 Identity:143/555 - (25%)
Similarity:245/555 - (44%) Gaps:50/555 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKAPGVSQMLKDGARMYSGLEEAVFRNISACKEFAQTMRSAYGPNGMNKMIINHIEKQFVTSDAG 70
            |||        :.||..:.||    .|||..:.....|||..||.|..||:::......:|.|..
 Worm     9 PKA--------ELARHAAALE----LNISGARGLQDVMRSNLGPKGTLKMLVSGAGDIKLTKDGN 61

  Fly    71 TIMRELDVEHPAAKLIVMASQMQDAEVGDGTNFVVVLAGALLESAEELLRLGITTAEISDGYEKA 135
            .::.|:.::||.|.:|..||..||...||||...|:|.|.||:.||.|:..|:....:::|:|.|
 Worm    62 VLLHEMAIQHPTASMIAKASTAQDDVTGDGTTSTVLLIGELLKQAESLVLEGLHPRIVTEGFEWA 126

  Fly   136 LEKALEILPNLVSHKIEDYRNVEK--VKEVLRTSIMSKQYGQ-EDFLNDLVSKACVSILPDEGTF 197
            ..|.||:|     .|.:....||:  :.||.||::.:|.:.: .|.:.:.|..|.::|..|....
 Worm   127 NTKTLELL-----EKFKKEAPVERDLLVEVCRTALRTKLHQKLADHITECVVDAVLAIRRDGEEP 186

  Fly   198 NVDNIRICKILGSGLTKSEVVRGMVFKRFVEGDVTYAEKAKIV----IFSCPVDI--IQTETKGT 256
            ::..:...::.......:.:|||:|    ::....:.:..:.|    |.:|.|.:  .:||....
 Worm   187 DLHMVEKMEMHHDSDMDTTLVRGLV----LDHGARHPDMPRHVKDAYILTCNVSLEYEKTEVNSG 247

  Fly   257 VLIKSADELLSFSSGEESLLESQIKAIADAGVKV------------VVAGGK-VGDMALHFLNKY 308
            :..|:|.|..:..:.|...:..::..|.:...||            ||...| :...:|..|...
 Worm   248 LFYKTAKEREALLAAEREFITRRVHKIIELKKKVIDNSPDGKNKGFVVINQKGIDPPSLDLLASE 312

  Fly   309 GLMAVRLNSKFDLRRLSRSVNATVLPRITTPSQEELGYCDKVCIEELGDTTIVAFRNEGKDSRIA 373
            |::|:|...:.::.||..:|....:..:...:.|:||:...|....||:.. ..|..|.:..:..
 Worm   313 GILALRRAKRRNMERLQLAVGGEAVNSVDDLTPEDLGWAGLVYEHSLGEEK-YTFIEECRAPKSV 376

  Fly   374 TVVIRGATDNFMDDIERALDDAINNFKCLTRDGRYLPGAGATEIELATQLSAYADTLPGLDQYAV 438
            |::|:|...:.:..|:.|:.|.:........|...||||.|.||.....|....:.|.|..:...
 Worm   377 TLLIKGPNKHTITQIKDAIHDGLRAVFNTIVDKAVLPGAAAFEIAAYVMLKKDVENLKGRAKLGA 441

  Fly   439 RKFANALEVFPKALAENSGINGTEIVNQLYLAHNNEAGKTIGFDIEAEKASTIDTTKAKLFDLYQ 503
            ..||.||.|.||.||.|.|.:..|.:.:| :.....||..|...::.|....::  ...::|...
 Worm   442 EAFAQALLVIPKTLAVNGGYDAQETLVKL-IEEKTAAGPDIAVGLDLETGGAVE--PQGIWDNVT 503

  Fly   504 SKFWGLKYAVGAAATILKVDQIIMAKRAGGPKVRQ 538
            .|...:..|...|..:|.||:::   |||...::|
 Worm   504 VKKNSISSATVLACNLLLVDEVM---RAGMTNLKQ 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT8NP_610418.1 TCP1_theta 20..529 CDD:239457 135/530 (25%)
Cpn60_TCP1 40..529 CDD:278544 129/510 (25%)
cct-6NP_741153.1 chap_CCT_zeta 3..534 CDD:274088 142/552 (26%)
TCP1_zeta 7..530 CDD:239458 141/548 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D207515at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.