DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ggamma1 and Kif3c

DIOPT Version :10

Sequence 1:NP_523662.1 Gene:Ggamma1 / 35881 FlyBaseID:FBgn0004921 Length:70 Species:Drosophila melanogaster
Sequence 2:NP_445938.1 Gene:Kif3c / 85248 RGDID:621538 Length:796 Species:Rattus norvegicus


Alignment Length:49 Identity:18/49 - (36%)
Similarity:27/49 - (55%) Gaps:11/49 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MSSSLQQQRVVVEQLRRE-AAI--DRQTISESCAKMMKYITEHEQEDYL 49
            |.:.||:|:   |:|..| |||  ||..:||...|:::     |:|..|
  Rat   459 MENYLQEQK---ERLEEEKAAIQDDRSLVSEEKQKLLE-----EKEKML 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ggamma1NP_523662.1 GGL 8..65 CDD:238024 17/45 (38%)
Kif3cNP_445938.1 KISc_KIF3 9..367 CDD:276822
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 251..292
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 397..421
Smc <452..>637 CDD:440809 18/49 (37%)
Globular. /evidence=ECO:0000255 633..793
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 754..796
Blue background indicates that the domain is not in the aligned region.

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